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107 Commits

Author SHA1 Message Date
Li Jiang
01c3c83653 Install wheel and setuptools (#1443) 2025-05-28 12:56:48 +08:00
Li Jiang
9b66103f7c Fix typo, add quotes to python-version (#1442) 2025-05-28 12:24:00 +08:00
Li Jiang
48dfd72e64 Fix CD actions (#1441)
* Fix CD actions

* Skip Build if no relevant changes
2025-05-28 10:45:27 +08:00
Li Jiang
dec92e5b02 Upgrade python 3.8 to 3.10 in github actions (#1440) 2025-05-27 21:34:21 +08:00
Li Jiang
22911ea1ef Merged PR 1685054: Add more logs and function wait_futures for easier post analysis (#1438)
- Add function wait_futures for easier post analysis
- Use logger instead of print

----
#### AI description  (iteration 1)
#### PR Classification
A code enhancement for debugging asynchronous mlflow logging and improving post-run analysis.

#### PR Summary
This PR adds detailed debug logging to the mlflow integration and introduces a new `wait_futures` function to streamline the collection of asynchronous task results for improved analysis.
- `flaml/fabric/mlflow.py`: Added debug log statements around starting and ending mlflow runs to trace run IDs and execution flow.
- `flaml/automl/automl.py`: Implemented the `wait_futures` function to handle asynchronous task results and replaced a print call with `logger.info` for consistent logging.
<!-- GitOpsUserAgent=GitOps.Apps.Server.pullrequestcopilot -->

Related work items: #4029592
2025-05-27 15:32:56 +08:00
murunlin
12183e5f73 Add the detailed info for parameter 'verbose' (#1435)
* explain-verbose-parameter

* concise-verbose-docstring

* explain-verbose-parameter

* explain-verbose-parameter

* test-ignore

* test-ignore

* sklearn-version-califonia

* submit-0526

---------

Co-authored-by: Runlin Mu (FESCO Adecco Human Resources) <v-runlinmu@microsoft.com>
Co-authored-by: Li Jiang <bnujli@gmail.com>
2025-05-27 10:01:01 +08:00
Li Jiang
c2b25310fc Sync Fabric till 2cd1c3da (#1433)
* Sync Fabric till 2cd1c3da

* Remove synapseml from tag names

* Fix 'NoneType' object has no attribute 'DataFrame'

* Deprecated 3.8 support

* Fix 'NoneType' object has no attribute 'DataFrame'

* Still use python 3.8 for pydoc

* Don't run tests in parallel

* Remove autofe and lowcode
2025-05-23 10:19:31 +08:00
murunlin
0f9420590d fix: best_model_for_estimator returns inconsistent feature_importances_ compared to automl.model (#1429)
* mrl-issue1422-0513

* fix version dependency

* fix datasets version

* test completion

---------

Co-authored-by: Runlin Mu (FESCO Adecco Human Resources) <v-runlinmu@microsoft.com>
Co-authored-by: Li Jiang <bnujli@gmail.com>
2025-05-15 09:37:34 +08:00
hexiang-x
5107c506b4 fix:When use_spark = True and mlflow_logging = True are set, an error is reported when logging the best model: 'NoneType' object has no attribute 'save' bug Something isn't working (#1432) 2025-05-14 19:34:06 +08:00
dependabot[bot]
9e219ef8dc Bump http-proxy-middleware from 2.0.7 to 2.0.9 in /website (#1425)
Bumps [http-proxy-middleware](https://github.com/chimurai/http-proxy-middleware) from 2.0.7 to 2.0.9.
- [Release notes](https://github.com/chimurai/http-proxy-middleware/releases)
- [Changelog](https://github.com/chimurai/http-proxy-middleware/blob/v2.0.9/CHANGELOG.md)
- [Commits](https://github.com/chimurai/http-proxy-middleware/compare/v2.0.7...v2.0.9)

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2025-04-23 14:22:12 +08:00
Li Jiang
6e4083743b Revert "Numpy 2.x is not supported yet. (#1424)" (#1426)
This reverts commit 17e95edd9e.
2025-04-22 21:31:44 +08:00
Li Jiang
17e95edd9e Numpy 2.x is not supported yet. (#1424) 2025-04-22 12:11:27 +08:00
Stickic-cyber
468bc62d27 Fix issue with "list index out of range" when max_iter=1 (#1419) 2025-04-09 21:54:17 +08:00
dependabot[bot]
437c239c11 Bump @babel/helpers from 7.20.1 to 7.26.10 in /website (#1413)
Bumps [@babel/helpers](https://github.com/babel/babel/tree/HEAD/packages/babel-helpers) from 7.20.1 to 7.26.10.
- [Release notes](https://github.com/babel/babel/releases)
- [Changelog](https://github.com/babel/babel/blob/main/CHANGELOG.md)
- [Commits](https://github.com/babel/babel/commits/v7.26.10/packages/babel-helpers)

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2025-03-14 15:51:06 +08:00
dependabot[bot]
8e753f1092 Bump @babel/runtime from 7.20.1 to 7.26.10 in /website (#1414)
Bumps [@babel/runtime](https://github.com/babel/babel/tree/HEAD/packages/babel-runtime) from 7.20.1 to 7.26.10.
- [Release notes](https://github.com/babel/babel/releases)
- [Changelog](https://github.com/babel/babel/blob/main/CHANGELOG.md)
- [Commits](https://github.com/babel/babel/commits/v7.26.10/packages/babel-runtime)

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2025-03-13 21:34:02 +08:00
dependabot[bot]
a3b57e11d4 Bump prismjs from 1.29.0 to 1.30.0 in /website (#1411)
Bumps [prismjs](https://github.com/PrismJS/prism) from 1.29.0 to 1.30.0.
- [Release notes](https://github.com/PrismJS/prism/releases)
- [Changelog](https://github.com/PrismJS/prism/blob/master/CHANGELOG.md)
- [Commits](https://github.com/PrismJS/prism/compare/v1.29.0...v1.30.0)

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2025-03-13 14:06:41 +08:00
dependabot[bot]
a80dcf9925 Bump @babel/runtime-corejs3 from 7.20.1 to 7.26.10 in /website (#1412)
Bumps [@babel/runtime-corejs3](https://github.com/babel/babel/tree/HEAD/packages/babel-runtime-corejs3) from 7.20.1 to 7.26.10.
- [Release notes](https://github.com/babel/babel/releases)
- [Changelog](https://github.com/babel/babel/blob/main/CHANGELOG.md)
- [Commits](https://github.com/babel/babel/commits/v7.26.10/packages/babel-runtime-corejs3)

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2025-03-13 10:04:03 +08:00
SkBlaz
7157af44e0 Improved error handling in case no scikit present (#1402)
* Improved error handling in case no scikit present

Currently there is no description for when this error is thrown. Being explicit seems of value.

* Update histgb.py

---------

Co-authored-by: Li Jiang <bnujli@gmail.com>
2025-03-03 15:39:43 +08:00
Li Jiang
1798c4591e Upgrade setuptools (#1410) 2025-03-01 08:05:51 +08:00
Li Jiang
dd26263330 Bump version to 2.3.5 (#1409) 2025-02-17 22:26:59 +08:00
Li Jiang
2ba5f8bed1 Fix params pop error (#1408) 2025-02-17 15:06:05 +08:00
Daniel Grindrod
d0a11958a5 fix: Fixed bug where group folds and sample weights couldn't be used in the same automl instance (#1405) 2025-02-15 10:41:27 +08:00
dependabot[bot]
0ef9b00a75 Bump serialize-javascript from 6.0.0 to 6.0.2 in /website (#1407)
Bumps [serialize-javascript](https://github.com/yahoo/serialize-javascript) from 6.0.0 to 6.0.2.
- [Release notes](https://github.com/yahoo/serialize-javascript/releases)
- [Commits](https://github.com/yahoo/serialize-javascript/compare/v6.0.0...v6.0.2)

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2025-02-14 12:36:49 +08:00
Will Charles
840f76e5e5 Changed tune.report import for ray>=2 (#1392)
* Changed tune.report import for ray>=2

* env: Changed pydantic restriction in env

* Reverted Pydantic install conditions

* Reverted Pydantic install conditions

* test: Check if GPU is available

* tests: uncommented a line

* tests: Better fix for Ray GPU checking

* tests: Added timeout to dataset loading

* tests: Deleted _test_hf_data()

* test: Reduce lrl2 dataset size

* bug: timeout error

* bug: timeout error

* fix: Added threading check for timout issue

* Undo old commits

* Timeout fix from #1406

---------

Co-authored-by: Daniel Grindrod <dannycg1996@gmail.com>
2025-02-14 09:38:33 +08:00
Li Jiang
d8b7d25b80 Fix test hang issue (#1406)
* Add try except to resource.setrlimit

* Set time limit only in main thread

* Check only test model

* Pytest debug

* Test separately

* Move test_model.py to automl folder
2025-02-13 19:50:35 +08:00
Li Jiang
6d53929803 Bump version to 2.3.4 (#1389) 2024-12-18 12:49:59 +08:00
Daniel Grindrod
c038fbca07 fix: KeyError no longer occurs when using groupfolds for regression tasks. (#1385)
* fix: Now resetting indexes for regression datasets when using group folds

* refactor: Simplified if statement to include all fold types

* docs: Updated docs to make it clear that group folds can be used for regression tasks

---------

Co-authored-by: Daniel Grindrod <daniel.grindrod@evotec.com>
Co-authored-by: Li Jiang <bnujli@gmail.com>
2024-12-18 10:06:58 +08:00
dependabot[bot]
6a99202492 Bump nanoid from 3.3.6 to 3.3.8 in /website (#1387)
Bumps [nanoid](https://github.com/ai/nanoid) from 3.3.6 to 3.3.8.
- [Release notes](https://github.com/ai/nanoid/releases)
- [Changelog](https://github.com/ai/nanoid/blob/main/CHANGELOG.md)
- [Commits](https://github.com/ai/nanoid/compare/3.3.6...3.3.8)

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2024-12-17 19:26:34 +08:00
Daniel Grindrod
42d1dcfa0e fix: Fixed bug with catboost and groups (#1383)
Co-authored-by: Daniel Grindrod <daniel.grindrod@evotec.com>
2024-12-17 13:54:49 +08:00
EgorKraevTransferwise
b83c8a7d3b Pass cost_attr and cost_budget from flaml.tune.run() to the search algo (#1382) 2024-12-04 20:50:15 +08:00
dependabot[bot]
b9194cdcf2 Bump cross-spawn from 7.0.3 to 7.0.6 in /website (#1379)
Bumps [cross-spawn](https://github.com/moxystudio/node-cross-spawn) from 7.0.3 to 7.0.6.
- [Changelog](https://github.com/moxystudio/node-cross-spawn/blob/master/CHANGELOG.md)
- [Commits](https://github.com/moxystudio/node-cross-spawn/compare/v7.0.3...v7.0.6)

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  dependency-type: indirect
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2024-11-20 15:48:39 +08:00
Li Jiang
9a1f6b0291 Bump version to 2.3.3 (#1378) 2024-11-13 11:44:34 +08:00
kernelmethod
07f4413aae Fix logging nuisances that can arise when importing flaml (#1377) 2024-11-13 07:49:55 +08:00
Daniel Grindrod
5a74227bc3 Flaml: fix lgbm reproducibility (#1369)
* fix: Fixed bug where every underlying LGBMRegressor or LGBMClassifier had n_estimators = 1

* test: Added test showing case where FLAMLised CatBoostModel result isn't reproducible

* fix: Fixing issue where callbacks cause LGBM results to not be reproducible

* Update test/automl/test_regression.py

Co-authored-by: Li Jiang <bnujli@gmail.com>

* fix: Adding back the LGBM EarlyStopping

* refactor: Fix tweaked to ensure other models aren't likely to be affected

* test: Fixed test to allow reproduced results to be better than the FLAML results, when LGBM earlystopping is involved

---------

Co-authored-by: Daniel Grindrod <Daniel.Grindrod@evotec.com>
Co-authored-by: Li Jiang <bnujli@gmail.com>
2024-11-01 10:06:15 +08:00
Ranuga
7644958e21 Add documentation for automl.model.estimator usage (#1311)
* Added documentation for automl.model.estimator usage

Updated documentation across various examples and the model.py file to include information about automl.model.estimator. This addition enhances the clarity and usability of FLAML by providing users with clear guidance on how to utilize this feature in their AutoML workflows. These changes aim to improve the overall user experience and facilitate easier understanding of FLAML's capabilities.

* fix: Ran pre-commit hook on docs

---------

Co-authored-by: Li Jiang <bnujli@gmail.com>
Co-authored-by: Daniel Grindrod <dannycg1996@gmail.com>
Co-authored-by: Daniel Grindrod <Daniel.Grindrod@evotec.com>
2024-10-31 20:53:54 +08:00
Daniel Grindrod
a316f84fe1 fix: LinearSVC results now reproducible (#1376)
Co-authored-by: Daniel Grindrod <Daniel.Grindrod@evotec.com>
2024-10-31 14:02:16 +08:00
Daniel Grindrod
72881d3a2b fix: Fixing the random state of ElasticNetClassifier by default, to ensure reproduciblity. Also included elasticnet in reproducibility tests (#1374)
Co-authored-by: Daniel Grindrod <Daniel.Grindrod@evotec.com>
Co-authored-by: Li Jiang <bnujli@gmail.com>
2024-10-29 14:21:43 +08:00
Li Jiang
69da685d1e Fix data transform issue, spark log_loss metric compute error and json dumps TypeError (Sync Fabric till 3c545e67) (#1371)
* Merged PR 1444697: Fix json dumps TypeError

Fix json dumps TypeError

----
Bug fix to address a `TypeError` in `json.dumps`.

This pull request fixes a `TypeError` encountered when using `json.dumps` on `automl._automl_user_configurations` by introducing a safe JSON serialization function.
- Added `safe_json_dumps` function in `flaml/fabric/mlflow.py` to handle non-serializable objects.
- Updated `MLflowIntegration` class in `flaml/fabric/mlflow.py` to use `safe_json_dumps` for JSON serialization.
- Modified `test/automl/test_multiclass.py` to test the new `safe_json_dumps` function.

Related work items: #3439408

* Fix data transform issue and spark log_loss metric compute error
2024-10-29 11:58:40 +08:00
Li Jiang
c01c3910eb Update version.py (#1372) 2024-10-29 09:33:23 +08:00
dependabot[bot]
98d3fd2f48 Bump http-proxy-middleware from 2.0.6 to 2.0.7 in /website (#1370)
Bumps [http-proxy-middleware](https://github.com/chimurai/http-proxy-middleware) from 2.0.6 to 2.0.7.
- [Release notes](https://github.com/chimurai/http-proxy-middleware/releases)
- [Changelog](https://github.com/chimurai/http-proxy-middleware/blob/v2.0.7/CHANGELOG.md)
- [Commits](https://github.com/chimurai/http-proxy-middleware/compare/v2.0.6...v2.0.7)

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2024-10-28 10:43:28 +08:00
Li Jiang
9724c626cc Remove outdated comment (#1366) 2024-10-24 12:17:21 +08:00
smty2018
0d92400200 Included that retrain_full = True does not include the user provided validation data in the docs. #1228 (#1245)
* Update Task-Oriented-AutoML.md

* Update Task-Oriented-AutoML.md

* Update marker

* Fix format

---------

Co-authored-by: Li Jiang <bnujli@gmail.com>
2024-10-23 16:48:45 +08:00
Daniel Grindrod
d224218ecf fix: FLAML catboost metrics arent reproducible (#1364)
* fix: CatBoostRegressors metrics are now reproducible

* test: Made tests live, which ensure the reproducibility of catboost models

* fix: Added defunct line of code as a comment

* fix: Re-adding removed if statement, and test to show one issue that if statement can cause

* fix: Stopped ending CatBoost training early when time budget is running out

---------

Co-authored-by: Daniel Grindrod <Daniel.Grindrod@evotec.com>
2024-10-23 13:51:23 +08:00
Daniel Grindrod
a2a5e1abb9 test: Adding tests to verify model reproducibility (#1362) 2024-10-12 09:53:16 +08:00
Daniel Grindrod
5c0f18b7bc fix: Cross validation process isn't always run to completion (#1360) 2024-10-01 08:24:53 +08:00
dependabot[bot]
e5d95f5674 Bump express from 4.19.2 to 4.21.0 in /website (#1357) 2024-09-22 11:01:00 +08:00
Li Jiang
49ba962d47 Support logger_formatter without automl dependencies (#1356) 2024-09-21 20:04:46 +08:00
Li Jiang
8e171bc402 Remove temporary pickle files (#1354)
* Remove temporary pickle files

* Update version to 2.3.1

* Use TemporaryDirectory for pickle and log_artifact

* Fix 'CatBoostClassifier' object has no attribute '_get_param_names'
2024-09-21 15:46:32 +08:00
dependabot[bot]
c90946f303 Bump webpack from 5.76.1 to 5.94.0 in /website (#1342)
Bumps [webpack](https://github.com/webpack/webpack) from 5.76.1 to 5.94.0.
- [Release notes](https://github.com/webpack/webpack/releases)
- [Commits](https://github.com/webpack/webpack/compare/v5.76.1...v5.94.0)

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2024-09-06 11:56:42 +08:00
dependabot[bot]
64f30af603 Bump micromatch from 4.0.5 to 4.0.8 in /website (#1343)
Bumps [micromatch](https://github.com/micromatch/micromatch) from 4.0.5 to 4.0.8.
- [Release notes](https://github.com/micromatch/micromatch/releases)
- [Changelog](https://github.com/micromatch/micromatch/blob/master/CHANGELOG.md)
- [Commits](https://github.com/micromatch/micromatch/compare/4.0.5...4.0.8)

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2024-09-05 15:18:26 +08:00
Li Jiang
f45582d3c7 Add info of tutorial automl 2024 (#1344)
* Add info of tutorial automl 2024

* Add notebooks

* Fix links

* Update usage of built-in LLMs
2024-09-04 19:35:09 +08:00
Li Jiang
bf4bca2195 Add contributors wall (#1341)
* Add contributors wall

* code format
2024-08-30 22:33:44 +08:00
Li Jiang
efaba26d2e Update version and readme (#1338)
* Update version and readme

* Update pr template
2024-08-22 22:33:23 +00:00
Li Jiang
62194f321d Update issue templates (#1337) 2024-08-21 10:00:48 +00:00
Li Jiang
5bfa0b1cd3 Improve mlflow integration and add more models (#1331)
* Add more spark models and improved mlflow integration

* Update test_extra_models, setup and gitignore

* Remove autofe

* Remove autofe

* Remove autofe

* Sync changes in internal

* Fix test for env without pyspark

* Fix import errors

* Fix tests

* Fix typos

* Fix pytorch-forecasting version

* Remove internal funcs, rename _mlflow.py

* Fix import error

* Fix dependency

* Fix experiment name setting

* Fix dependency

* Update pandas version

* Update pytorch-forecasting version

* Add warning message for not has_automl

* Fix test errors with nltk 3.8.2

* Don't enable mlflow logging w/o an active run

* Fix pytorch-forecasting can't be pickled issue

* Update pyspark tests condition

* Update synapseml

* Update synapseml

* No parent run, no logging for OSS

* Log when autolog is enabled

* upgrade code

* Enable autolog for tune

* Increase time budget for test

* End run before start a new run

* Update parent run

* Fix import error

* clean up

* skip macos and win

* Update notes

* Update default value of model_history
2024-08-13 07:53:47 +00:00
dependabot[bot]
bd34b4e75a Bump express from 4.18.2 to 4.19.2 in /website (#1293)
Bumps [express](https://github.com/expressjs/express) from 4.18.2 to 4.19.2.
- [Release notes](https://github.com/expressjs/express/releases)
- [Changelog](https://github.com/expressjs/express/blob/master/History.md)
- [Commits](https://github.com/expressjs/express/compare/4.18.2...4.19.2)

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2024-08-12 12:55:25 +00:00
dependabot[bot]
7670945298 Bump follow-redirects from 1.15.4 to 1.15.6 in /website (#1291)
Bumps [follow-redirects](https://github.com/follow-redirects/follow-redirects) from 1.15.4 to 1.15.6.
- [Release notes](https://github.com/follow-redirects/follow-redirects/releases)
- [Commits](https://github.com/follow-redirects/follow-redirects/compare/v1.15.4...v1.15.6)

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2024-08-12 12:52:11 +00:00
dependabot[bot]
43537cb539 Bump webpack-dev-middleware from 5.3.3 to 5.3.4 in /website (#1292)
Bumps [webpack-dev-middleware](https://github.com/webpack/webpack-dev-middleware) from 5.3.3 to 5.3.4.
- [Release notes](https://github.com/webpack/webpack-dev-middleware/releases)
- [Changelog](https://github.com/webpack/webpack-dev-middleware/blob/v5.3.4/CHANGELOG.md)
- [Commits](https://github.com/webpack/webpack-dev-middleware/compare/v5.3.3...v5.3.4)

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Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Li Jiang <bnujli@gmail.com>
2024-08-12 12:50:17 +00:00
Gökhan Geyik
f913b79225 Fix(doc): Page Not Found (#1296)
- Fix the redirect link that received a page not found error.

Co-authored-by: Li Jiang <bnujli@gmail.com>
Co-authored-by: Jirka Borovec <6035284+Borda@users.noreply.github.com>
2024-08-12 12:01:46 +00:00
dependabot[bot]
a092a39b5e Bump braces from 3.0.2 to 3.0.3 in /website (#1336)
Bumps [braces](https://github.com/micromatch/braces) from 3.0.2 to 3.0.3.
- [Changelog](https://github.com/micromatch/braces/blob/master/CHANGELOG.md)
- [Commits](https://github.com/micromatch/braces/compare/3.0.2...3.0.3)

---
updated-dependencies:
- dependency-name: braces
  dependency-type: indirect
...

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Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Li Jiang <bnujli@gmail.com>
2024-08-12 08:37:56 +00:00
Jirka Borovec
04bf1b8741 update py versions, sourced from PyPI (#1332)
* update py versions, sourced from PyPI

* lint

---------

Co-authored-by: Li Jiang <bnujli@gmail.com>
2024-08-12 04:53:48 +00:00
Jirka Borovec
b348cb1136 configure & apply pyupgrade with py3.8+ (#1333)
* configure pyupgrade with `py3.8+`

* apply update

---------

Co-authored-by: Li Jiang <bnujli@gmail.com>
2024-08-12 02:54:18 +00:00
Jirka Borovec
cd0e88e383 fix missing req. arg for new datasets package (#1334)
Co-authored-by: Li Jiang <bnujli@gmail.com>
2024-08-12 02:19:11 +00:00
Li Jiang
a17c6e392e Fix test errors of nltk and numpy (#1335)
* Fix test errors with nltk 3.8.2

* Fix test errors with numpy large

* Fix test errors with numpy large
2024-08-12 00:14:21 +00:00
Li Jiang
52627ff14b Add 3.11 icon (#1330) 2024-08-08 06:18:49 +00:00
Li Jiang
7729855f49 Bump version to 2.2.0 (#1329) 2024-08-08 01:05:53 +00:00
Noël Barron
0fe284b21f Doc and comment typos improvements (#1319)
* typographical corrections in the descriptions, comment improvements, general formatting for consistency

* consistent indentation for better readability, improved comments, typographical corrections

* updated docstrings for better clarity, added type hint for **kwargs, typographical corrections (no functionality changes)

* Fix format

---------

Co-authored-by: Li Jiang <bnujli@gmail.com>
2024-08-06 15:29:37 +00:00
Yang, Bo
853c9501bc Keep searching hyperparameters when r2_score raises an error (#1325)
* Keep searching hyperparameters when `r2_score` raises an error

* Add log info

---------

Co-authored-by: Li Jiang <bnujli@gmail.com>
2024-08-06 15:01:10 +00:00
Yang, Bo
8e63dd417b Don't pass callbacks=None to XGBoostSklearnEstimator._fit (#1322)
* Don't pass `callbacks=None` to `XGBoostSklearnEstimator._fit`

The original implmentation would pass `callbacks=None` to `XGBoostSklearnEstimator._fit` and eventually lead to a `TypeError` of `XGBModel.fit() got an unexpected keyword argument 'callbacks'`. This PR instead does not pass the `callbacks=None` parameter to avoid the error.

* Update setup.py to allow for xgboost 2.x

---------

Co-authored-by: Li Jiang <bnujli@gmail.com>
2024-08-06 09:24:11 +00:00
Li Jiang
f27f98c6d7 Fix test mac os python 3.11 (#1328)
* add test

* Skip test_autohf_classificationhead.py for MacOS py311

* Skip test/nlp/test_default.py for MacOS py311

* Check test_tune

* Check test_lexiflow

* Check test_tune

* Remove checks

* Skip test_nested_run for macos py311)

* Skip test_nested_space for macos py311

* Test tune on MacOS Python 3.11 w/o pytest

* Split tests by folder

* Skip test lexiflow for MacOS py311

* Enable test_tune for MacOS py311

* Clean up
2024-08-06 05:50:44 +00:00
Li Jiang
a68d073ccf Add support to python 3.11 (#1326)
* Add support to python 3.11

* Fix workflow python version comparison

* Ray is not supported in python 3.11

* Fix test_numpy
2024-07-31 00:18:41 +00:00
Li Jiang
15fda2206b Add example of how to get best config and convert it to parameters (#1323) 2024-07-24 08:20:36 +00:00
leafy-lee
a9d7b7f971 Handle IntLogUniformDistribution Deprecation before Optuna<=v4.0.0 (#1324)
Co-authored-by: Yifei Li <v-liyifei@microsoft.com>
2024-07-24 07:02:06 +00:00
Li Jiang
d24d2e0088 Upgrade Optuna (#1321) 2024-07-23 01:21:20 +00:00
Ranuga
67f4048667 Update ts_model.py (#1312)
Co-authored-by: Li Jiang <bnujli@gmail.com>
2024-07-22 05:32:51 +00:00
Li Jiang
d8129b9211 Fix typos, upgrade yarn packages, add some improvements (#1290)
* Fix typos, upgrade yarn packages, add some improvements

* Fix joblib 1.4.0 breaks joblib-spark

* Fix xgboost test error

* Pin xgboost<2.0.0

* Try update prophet to 1.5.1

* Update github workflow

* Revert prophet version

* Update github workflow

* Update install libomp

* Fix test errors

* Fix test errors

* Add retry to test and coverage

* Revert "Add retry to test and coverage"

This reverts commit ce13097cd5.

* Increase test budget

* Add more data to test_models, try fixing ValueError: Found array with 0 sample(s) (shape=(0, 252)) while a minimum of 1 is required.
2024-07-19 13:40:04 +00:00
Jirka Borovec
165d7467f9 precommit: introduce mdformat (#1276)
* precommit: introduce `mdformat`

* precommit: apply
2024-03-19 22:46:56 +00:00
Gleb Levitski
3de0dc667e Add ruff sort to pre-commit and sort imports in the library (#1259)
* lint

* bump ver

* bump ver

* fixed circular import

---------

Co-authored-by: Jirka Borovec <6035284+Borda@users.noreply.github.com>
2024-03-12 21:28:57 +00:00
dependabot[bot]
6840dc2b09 Bump follow-redirects from 1.15.2 to 1.15.4 in /website (#1266)
Bumps [follow-redirects](https://github.com/follow-redirects/follow-redirects) from 1.15.2 to 1.15.4.
- [Release notes](https://github.com/follow-redirects/follow-redirects/releases)
- [Commits](https://github.com/follow-redirects/follow-redirects/compare/v1.15.2...v1.15.4)

---
updated-dependencies:
- dependency-name: follow-redirects
  dependency-type: indirect
...

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Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Jirka Borovec <6035284+Borda@users.noreply.github.com>
2024-03-12 16:50:01 +00:00
Chi Wang
1a9fa3ac23 Np.inf (#1289)
* np.Inf -> np.inf

* bump version to 2.1.2
2024-03-12 16:27:05 +00:00
Jack Gerrits
325baa40a5 Don't specify a pre-release in the numpy dependency (#1286) 2024-03-12 14:43:49 +00:00
Dhruv Thakur
550d1cfe9b Update AutoML-NLP.md (#1239)
* Update AutoML-NLP.md

#834

* more space

---------

Co-authored-by: Jirka Borovec <6035284+Borda@users.noreply.github.com>
Co-authored-by: Chi Wang <wang.chi@microsoft.com>
2024-02-10 07:32:57 +00:00
Jirka Borovec
249f0f1708 docs: fix link to reference (#1263)
* docs: fix link to reference

* Apply suggestions from code review

Co-authored-by: Li Jiang <bnujli@gmail.com>

---------

Co-authored-by: Li Jiang <bnujli@gmail.com>
2024-02-09 16:48:51 +00:00
Li Jiang
b645da3ea7 Fix spark errors (#1274)
* Fix mlflow not found error

* Fix joblib>1.2.0 force cancel error

* Remove joblib version constraint

* Update log

* Improve joblib exception catch

* Added permissions
2024-02-09 01:08:24 +00:00
ScottzCodez
0415638dd1 Update Installation.md (#1258)
Typo Fixed.
2023-11-29 01:39:20 +00:00
Gleb Levitski
6b93c2e394 [ENH] Add support for sklearn HistGradientBoostingEstimator (#1230)
* Update model.py

HistGradientBoosting support

* Create __init__.py

* Update model.py

* Create histgb.py

* Update __init__.py

* Update test_model.py

* added histgb to estimator list

* Update Task-Oriented-AutoML.md

added docs

* lint

* fixed bugs

---------

Co-authored-by: Gleb <gleb@Glebs-MacBook-Pro.local>
Co-authored-by: Li Jiang <bnujli@gmail.com>
2023-10-31 14:45:23 +00:00
dependabot[bot]
a93bf39720 Bump @babel/traverse from 7.20.1 to 7.23.2 in /website (#1248)
Bumps [@babel/traverse](https://github.com/babel/babel/tree/HEAD/packages/babel-traverse) from 7.20.1 to 7.23.2.
- [Release notes](https://github.com/babel/babel/releases)
- [Changelog](https://github.com/babel/babel/blob/main/CHANGELOG.md)
- [Commits](https://github.com/babel/babel/commits/v7.23.2/packages/babel-traverse)

---
updated-dependencies:
- dependency-name: "@babel/traverse"
  dependency-type: indirect
...

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2023-10-21 14:48:46 +00:00
dependabot[bot]
dc8060a21b Bump postcss from 8.4.18 to 8.4.31 in /website (#1238)
Bumps [postcss](https://github.com/postcss/postcss) from 8.4.18 to 8.4.31.
- [Release notes](https://github.com/postcss/postcss/releases)
- [Changelog](https://github.com/postcss/postcss/blob/main/CHANGELOG.md)
- [Commits](https://github.com/postcss/postcss/compare/8.4.18...8.4.31)

---
updated-dependencies:
- dependency-name: postcss
  dependency-type: indirect
...

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Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Qingyun Wu <qingyun.wu@psu.edu>
2023-10-12 07:56:29 +00:00
Aindree Chatterjee
30db685cee Update README.md with autogen links (#1235)
* Update README.md

Added the links to discord, website and github repo for Autogen in ReadMe.md's first news.
In corelation to issue #1231

* Update README.md
2023-10-09 15:32:39 +00:00
Chi Wang
fda9fa0103 improve docstr of preprocessors (#1227)
* improve docstr of preprocessors

* Update SynapseML version

* RFix test

---------

Co-authored-by: Li Jiang <bnujli@gmail.com>
2023-09-29 03:07:21 +00:00
Qingyun Wu
830ec4541c Update autogen links (#1214)
* update links

* update autogen doc link

* wording

---------

Co-authored-by: Chi Wang <wang.chi@microsoft.com>
2023-09-23 16:55:30 +00:00
Dominik Moritz
46162578f8 Fix typo Whetehr -> Whether (#1220)
Co-authored-by: Chi Wang <wang.chi@microsoft.com>
2023-09-22 15:27:02 +00:00
Dominik Moritz
8658e51182 fix ref to research (#1218)
Co-authored-by: Chi Wang <wang.chi@microsoft.com>
2023-09-22 15:26:21 +00:00
Chi Wang
868e7dd1ca support xgboost 2.0 (#1219)
* support xgboost 2.0

* try classes_

* test version

* quote

* use_label_encoder

* Fix xgboost test error

* remove deprecated files

* remove deprecated files

* remove deprecated import

* replace deprecated import in integrate_spark.ipynb

* replace deprecated import in automl_lightgbm.ipynb

* formatted integrate_spark.ipynb

* replace deprecated import

* try fix driver python path

* Update python-package.yml

* replace deprecated reference

* move spark python env var to other section

* Update setup.py, install xgb<2 for MacOS

* Fix typo

* assert

* Try assert xgboost version

* Fail fast

* Keep all test/spark to try fail fast

* No need to skip spark test in Mac or Win

* Remove assert xgb version

* Remove fail fast

* Found root cause, fix test_sparse_matrix_xgboost

* Revert "No need to skip spark test in Mac or Win"

This reverts commit a09034817f.

* remove assertion

---------

Co-authored-by: Li Jiang <bnujli@gmail.com>
Co-authored-by: levscaut <57213911+levscaut@users.noreply.github.com>
Co-authored-by: levscaut <lwd2010530@qq.com>
Co-authored-by: Li Jiang <lijiang1@microsoft.com>
2023-09-22 06:55:00 +00:00
Chi Wang
4886cb5689 Rename Responsive -> Conversable (#1202)
* responsive -> conversable

* preview

* rename

* register reply

* rename and version

* bump version to 2.1.0

* notebook

* bug fix
2023-09-12 00:07:35 +00:00
Chi Wang
599731cb22 rename human to user_proxy (#1215)
* rename human to user_proxy

* notebook update and bug fix
2023-09-11 14:33:47 +00:00
Chi Wang
0cb79dfdff group chat for visualization (#1213)
* group chat for visualization

* show figure

* webpage update

* link update

* example 2

* example 2

---------

Co-authored-by: Qingyun Wu <qingyun.wu@psu.edu>
2023-09-10 23:20:45 +00:00
Qingyun Wu
f70df312f4 Migration headsup (#1204)
* add readme

* migration headsup

* remove move date

* Update README.md

Co-authored-by: Chi Wang <wang.chi@microsoft.com>

---------

Co-authored-by: Chi Wang <wang.chi@microsoft.com>
2023-09-09 00:08:24 +00:00
Chi Wang
93b9e09166 admin takeover in group chat (#1209)
* admin takeover in group chat

* comments

* add comments
2023-09-07 02:17:53 +00:00
Qingyun Wu
3c6e191044 fix typo (#1210) 2023-09-05 19:02:48 +00:00
Chi Wang
5f9b514be7 suffix in model name (#1206)
* suffix in model name

* bump version to 2.0.3
2023-09-04 02:32:51 +00:00
Chi Wang
44932712c4 Prompt improvement (#1203)
* prompt improvement

* image None for unsupported lang

* notebook update

* prompt improvement
2023-08-30 00:54:09 +00:00
Li Jiang
f0731e2240 Update readme and AutoGen docs (#1183)
* Update readme and AutoGen docs

* Update Autogen#notebook-examples, Add link to AutoGen arxiv

* Update website/docs/Use-Cases/Autogen.md

Co-authored-by: Chi Wang <wang.chi@microsoft.com>

* Update link

---------

Co-authored-by: Chi Wang <wang.chi@microsoft.com>
Co-authored-by: Qingyun Wu <qingyun.wu@psu.edu>
2023-08-29 13:52:33 +00:00
Chi Wang
3a3e11535f document response fields (#1199) 2023-08-28 03:01:41 +00:00
Chi Wang
57a2bea95a prompt improvement (#1188)
* test

* chart

* plan

* separate

* bump version to 2.0.1

* explain plan and code/lang

* notebook update

* notebook update

* typo

* plan

* match can be None
2023-08-27 22:16:52 +00:00
Yiran Wu
87c2361040 fix generate_reply when sender is None. (#1186)
* fix generate_reply

* code format

* add test case

* update

* update

* Update test/autogen/agentchat/test_responsive_agent.py

Co-authored-by: Chi Wang <wang.chi@microsoft.com>

* Update test/autogen/agentchat/test_responsive_agent.py

Co-authored-by: Chi Wang <wang.chi@microsoft.com>

* Update flaml/autogen/agentchat/responsive_agent.py

Co-authored-by: Chi Wang <wang.chi@microsoft.com>

---------

Co-authored-by: Chi Wang <wang.chi@microsoft.com>
2023-08-25 10:50:22 +00:00
Yiran Wu
07b97eb469 cover function calls with no arguments (#1185) 2023-08-20 05:28:29 +00:00
264 changed files with 20112 additions and 4794 deletions

73
.github/ISSUE_TEMPLATE.md vendored Normal file
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@@ -0,0 +1,73 @@
### Description
<!-- A clear and concise description of the issue or feature request. -->
### Environment
- FLAML version: <!-- Specify the FLAML version (e.g., v0.2.0) -->
- Python version: <!-- Specify the Python version (e.g., 3.8) -->
- Operating System: <!-- Specify the OS (e.g., Windows 10, Ubuntu 20.04) -->
### Steps to Reproduce (for bugs)
<!-- Provide detailed steps to reproduce the issue. Include code snippets, configuration files, or any other relevant information. -->
1. Step 1
1. Step 2
1. ...
### Expected Behavior
<!-- Describe what you expected to happen. -->
### Actual Behavior
<!-- Describe what actually happened. Include any error messages, stack traces, or unexpected behavior. -->
### Screenshots / Logs (if applicable)
<!-- If relevant, include screenshots or logs that help illustrate the issue. -->
### Additional Information
<!-- Include any additional information that might be helpful, such as specific configurations, data samples, or context about the environment. -->
### Possible Solution (if you have one)
<!-- If you have suggestions on how to address the issue, provide them here. -->
### Is this a Bug or Feature Request?
<!-- Choose one: Bug | Feature Request -->
### Priority
<!-- Choose one: High | Medium | Low -->
### Difficulty
<!-- Choose one: Easy | Moderate | Hard -->
### Any related issues?
<!-- If this is related to another issue, reference it here. -->
### Any relevant discussions?
<!-- If there are any discussions or forum threads related to this issue, provide links. -->
### Checklist
<!-- Please check the items that you have completed -->
- [ ] I have searched for similar issues and didn't find any duplicates.
- [ ] I have provided a clear and concise description of the issue.
- [ ] I have included the necessary environment details.
- [ ] I have outlined the steps to reproduce the issue.
- [ ] I have included any relevant logs or screenshots.
- [ ] I have indicated whether this is a bug or a feature request.
- [ ] I have set the priority and difficulty levels.
### Additional Comments
<!-- Any additional comments or context that you think would be helpful. -->

53
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@@ -0,0 +1,53 @@
name: Bug Report
description: File a bug report
title: "[Bug]: "
labels: ["bug"]
body:
- type: textarea
id: description
attributes:
label: Describe the bug
description: A clear and concise description of what the bug is.
placeholder: What went wrong?
- type: textarea
id: reproduce
attributes:
label: Steps to reproduce
description: |
Steps to reproduce the behavior:
1. Step 1
2. Step 2
3. ...
4. See error
placeholder: How can we replicate the issue?
- type: textarea
id: modelused
attributes:
label: Model Used
description: A description of the model that was used when the error was encountered
placeholder: gpt-4, mistral-7B etc
- type: textarea
id: expected_behavior
attributes:
label: Expected Behavior
description: A clear and concise description of what you expected to happen.
placeholder: What should have happened?
- type: textarea
id: screenshots
attributes:
label: Screenshots and logs
description: If applicable, add screenshots and logs to help explain your problem.
placeholder: Add screenshots here
- type: textarea
id: additional_information
attributes:
label: Additional Information
description: |
- FLAML Version: <!-- Specify the FLAML version (e.g., v0.2.0) -->
- Operating System: <!-- Specify the OS (e.g., Windows 10, Ubuntu 20.04) -->
- Python Version: <!-- Specify the Python version (e.g., 3.8) -->
- Related Issues: <!-- Link to any related issues here (e.g., #1) -->
- Any other relevant information.
placeholder: Any additional details

1
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@@ -0,0 +1 @@
blank_issues_enabled: true

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@@ -0,0 +1,26 @@
name: Feature Request
description: File a feature request
labels: ["enhancement"]
title: "[Feature Request]: "
body:
- type: textarea
id: problem_description
attributes:
label: Is your feature request related to a problem? Please describe.
description: A clear and concise description of what the problem is. Ex. I'm always frustrated when [...]
placeholder: What problem are you trying to solve?
- type: textarea
id: solution_description
attributes:
label: Describe the solution you'd like
description: A clear and concise description of what you want to happen.
placeholder: How do you envision the solution?
- type: textarea
id: additional_context
attributes:
label: Additional context
description: Add any other context or screenshots about the feature request here.
placeholder: Any additional information

View File

@@ -0,0 +1,41 @@
name: General Issue
description: File a general issue
title: "[Issue]: "
labels: []
body:
- type: textarea
id: description
attributes:
label: Describe the issue
description: A clear and concise description of what the issue is.
placeholder: What went wrong?
- type: textarea
id: reproduce
attributes:
label: Steps to reproduce
description: |
Steps to reproduce the behavior:
1. Step 1
2. Step 2
3. ...
4. See error
placeholder: How can we replicate the issue?
- type: textarea
id: screenshots
attributes:
label: Screenshots and logs
description: If applicable, add screenshots and logs to help explain your problem.
placeholder: Add screenshots here
- type: textarea
id: additional_information
attributes:
label: Additional Information
description: |
- FLAML Version: <!-- Specify the FLAML version (e.g., v0.2.0) -->
- Operating System: <!-- Specify the OS (e.g., Windows 10, Ubuntu 20.04) -->
- Python Version: <!-- Specify the Python version (e.g., 3.8) -->
- Related Issues: <!-- Link to any related issues here (e.g., #1) -->
- Any other relevant information.
placeholder: Any additional details

View File

@@ -12,7 +12,7 @@
## Checks
<!-- - I've used [pre-commit](https://microsoft.github.io/FLAML/docs/Contribute#pre-commit) to lint the changes in this PR (note the same in integrated in our CI checks). -->
- [ ] I've used [pre-commit](https://microsoft.github.io/FLAML/docs/Contribute#pre-commit) to lint the changes in this PR (note the same in integrated in our CI checks).
- [ ] I've included any doc changes needed for https://microsoft.github.io/FLAML/. See https://microsoft.github.io/FLAML/docs/Contribute#documentation to build and test documentation locally.
- [ ] I've added tests (if relevant) corresponding to the changes introduced in this PR.
- [ ] I've made sure all auto checks have passed.

View File

@@ -12,26 +12,17 @@ jobs:
deploy:
strategy:
matrix:
os: ['ubuntu-latest']
python-version: [3.8]
os: ["ubuntu-latest"]
python-version: ["3.10"]
runs-on: ${{ matrix.os }}
environment: package
steps:
- name: Checkout
uses: actions/checkout@v3
- name: Cache conda
uses: actions/cache@v3
uses: actions/checkout@v4
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v5
with:
path: ~/conda_pkgs_dir
key: conda-${{ matrix.os }}-python-${{ matrix.python-version }}-${{ hashFiles('environment.yml') }}
- name: Setup Miniconda
uses: conda-incubator/setup-miniconda@v2
with:
auto-update-conda: true
auto-activate-base: false
activate-environment: hcrystalball
python-version: ${{ matrix.python-version }}
use-only-tar-bz2: true
- name: Install from source
# This is required for the pre-commit tests
shell: pwsh
@@ -42,7 +33,7 @@ jobs:
- name: Build
shell: pwsh
run: |
pip install twine
pip install twine wheel setuptools
python setup.py sdist bdist_wheel
- name: Publish to PyPI
env:

View File

@@ -17,6 +17,9 @@ on:
merge_group:
types: [checks_requested]
permissions:
contents: write
jobs:
checks:
if: github.event_name != 'push'
@@ -34,11 +37,11 @@ jobs:
- name: setup python
uses: actions/setup-python@v4
with:
python-version: "3.8"
python-version: "3.10"
- name: pydoc-markdown install
run: |
python -m pip install --upgrade pip
pip install pydoc-markdown==4.5.0
pip install pydoc-markdown==4.7.0
- name: pydoc-markdown run
run: |
pydoc-markdown
@@ -70,11 +73,11 @@ jobs:
- name: setup python
uses: actions/setup-python@v4
with:
python-version: "3.8"
python-version: "3.10"
- name: pydoc-markdown install
run: |
python -m pip install --upgrade pip
pip install pydoc-markdown==4.5.0
pip install pydoc-markdown==4.7.0
- name: pydoc-markdown run
run: |
pydoc-markdown

View File

@@ -13,6 +13,8 @@ on:
- 'notebook/autogen_chatgpt_gpt4.ipynb'
- '.github/workflows/openai.yml'
permissions: {}
jobs:
test:
strategy:

View File

@@ -10,6 +10,7 @@ defaults:
run:
shell: bash
permissions: {}
jobs:
pre-commit-check:

View File

@@ -14,9 +14,16 @@ on:
- 'setup.py'
pull_request:
branches: ['main']
paths:
- 'flaml/**'
- 'test/**'
- 'notebook/**'
- '.github/workflows/python-package.yml'
- 'setup.py'
merge_group:
types: [checks_requested]
permissions: {}
concurrency:
group: ${{ github.workflow }}-${{ github.ref }}-${{ github.head_ref }}
cancel-in-progress: ${{ github.ref != 'refs/heads/main' }}
@@ -29,19 +36,17 @@ jobs:
fail-fast: false
matrix:
os: [ubuntu-latest, macos-latest, windows-2019]
python-version: ["3.8", "3.9", "3.10"]
python-version: ["3.9", "3.10", "3.11"]
steps:
- uses: actions/checkout@v3
- uses: actions/checkout@v4
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v4
uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python-version }}
- name: On mac + python 3.10, install libomp to facilitate lgbm and xgboost install
if: matrix.os == 'macOS-latest' && matrix.python-version == '3.10'
- name: On mac, install libomp to facilitate lgbm and xgboost install
if: matrix.os == 'macOS-latest'
run: |
# remove libomp version constraint after xgboost works with libomp>11.1.0 on python 3.10
wget https://raw.githubusercontent.com/Homebrew/homebrew-core/679923b4eb48a8dc7ecc1f05d06063cd79b3fc00/Formula/libomp.rb -O $(find $(brew --repository) -name libomp.rb)
brew unlink libomp
brew update
brew install libomp
export CC=/usr/bin/clang
export CXX=/usr/bin/clang++
@@ -51,40 +56,42 @@ jobs:
export LDFLAGS="$LDFLAGS -Wl,-rpath,/usr/local/opt/libomp/lib -L/usr/local/opt/libomp/lib -lomp"
- name: Install packages and dependencies
run: |
python -m pip install --upgrade pip wheel
python -m pip install --upgrade pip wheel setuptools
pip install -e .
python -c "import flaml"
pip install -e .[test]
- name: On Ubuntu python 3.8, install pyspark 3.2.3
if: matrix.python-version == '3.8' && matrix.os == 'ubuntu-latest'
- name: On Ubuntu python 3.10, install pyspark 3.4.1
if: matrix.python-version == '3.10' && matrix.os == 'ubuntu-latest'
run: |
pip install pyspark==3.2.3
pip install pyspark==3.4.1
pip list | grep "pyspark"
- name: If linux, install ray 2
if: matrix.os == 'ubuntu-latest'
- name: On Ubuntu python 3.11, install pyspark 3.5.1
if: matrix.python-version == '3.11' && matrix.os == 'ubuntu-latest'
run: |
pip install pyspark==3.5.1
pip list | grep "pyspark"
- name: If linux and python<3.11, install ray 2
if: matrix.os == 'ubuntu-latest' && matrix.python-version != '3.11'
run: |
pip install "ray[tune]<2.5.0"
- name: If mac, install ray
if: matrix.os == 'macOS-latest'
- name: If mac and python 3.10, install ray and xgboost 1
if: matrix.os == 'macOS-latest' && matrix.python-version == '3.10'
run: |
pip install -e .[ray]
- name: If linux or mac, install prophet on python < 3.9
if: (matrix.os == 'macOS-latest' || matrix.os == 'ubuntu-latest') && matrix.python-version != '3.9' && matrix.python-version != '3.10'
# use macOS to test xgboost 1, but macOS also supports xgboost 2
pip install "xgboost<2"
- name: If linux, install prophet on python < 3.9
if: matrix.os == 'ubuntu-latest' && matrix.python-version == '3.8'
run: |
pip install -e .[forecast]
- name: Install vw on python < 3.10
if: matrix.python-version != '3.10'
if: matrix.python-version == '3.8' || matrix.python-version == '3.9'
run: |
pip install -e .[vw]
- name: Uninstall pyspark on (python 3.9) or (python 3.8 + windows)
if: matrix.python-version == '3.9' || (matrix.python-version == '3.8' && matrix.os == 'windows-2019')
run: |
# Uninstall pyspark to test env without pyspark
pip uninstall -y pyspark
- name: Test with pytest
if: matrix.python-version != '3.10'
run: |
pytest test
pytest test/
- name: Coverage
if: matrix.python-version == '3.10'
run: |

19
.gitignore vendored
View File

@@ -163,5 +163,24 @@ output/
flaml/tune/spark/mylearner.py
*.pkl
data/
benchmark/pmlb/csv_datasets
benchmark/*.csv
checkpoints/
test/default
test/housing.json
test/nlp/default/transformer_ms/seq-classification.json
flaml/fabric/fanova/_fanova.c
# local config files
*.config.local
local_debug/
patch.diff
# Test things
notebook/lightning_logs/
lightning_logs/
flaml/autogen/extensions/tmp/
test/autogen/my_tmp/

View File

@@ -22,10 +22,28 @@ repos:
- id: trailing-whitespace
- id: end-of-file-fixer
- id: no-commit-to-branch
- repo: https://github.com/asottile/pyupgrade
rev: v2.31.1
hooks:
- id: pyupgrade
args: [--py38-plus]
name: Upgrade code
- repo: https://github.com/psf/black
rev: 23.3.0
hooks:
- id: black
- repo: https://github.com/executablebooks/mdformat
rev: 0.7.17
hooks:
- id: mdformat
additional_dependencies:
- mdformat-gfm
- mdformat-black
- mdformat_frontmatter
- repo: https://github.com/charliermarsh/ruff-pre-commit
rev: v0.0.261
hooks:

View File

@@ -1,5 +1,5 @@
# basic setup
FROM python:3.7
FROM mcr.microsoft.com/devcontainers/python:3.10
RUN apt-get update && apt-get -y update
RUN apt-get install -y sudo git npm

375
NOTICE.md
View File

@@ -1,221 +1,222 @@
NOTICES
# NOTICES
This repository incorporates material as listed below or described in the code.
#
## Component. Ray.
Code in tune/[analysis.py, sample.py, trial.py, result.py],
searcher/[suggestion.py, variant_generator.py], and scheduler/trial_scheduler.py is adapted from
Code in tune/\[analysis.py, sample.py, trial.py, result.py\],
searcher/\[suggestion.py, variant_generator.py\], and scheduler/trial_scheduler.py is adapted from
https://github.com/ray-project/ray/blob/master/python/ray/tune/
## Open Source License/Copyright Notice.
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______________________________________________________________________
Code in python/ray/rllib/{evolution_strategies, dqn} adapted from
https://github.com/openai (MIT License)
@@ -240,7 +241,7 @@ LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
THE SOFTWARE.
--------------------------------------------------------------------------------
______________________________________________________________________
Code in python/ray/rllib/impala/vtrace.py from
https://github.com/deepmind/scalable_agent
@@ -251,7 +252,9 @@ Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
https://www.apache.org/licenses/LICENSE-2.0
```
https://www.apache.org/licenses/LICENSE-2.0
```
Unless required by applicable law or agreed to in writing, software
distributed under the License is distributed on an "AS IS" BASIS,
@@ -259,7 +262,8 @@ WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
See the License for the specific language governing permissions and
limitations under the License.
--------------------------------------------------------------------------------
______________________________________________________________________
Code in python/ray/rllib/ars is adapted from https://github.com/modestyachts/ARS
Copyright (c) 2018, ARS contributors (Horia Mania, Aurelia Guy, Benjamin Recht)
@@ -269,11 +273,11 @@ Redistribution and use of ARS in source and binary forms, with or without
modification, are permitted provided that the following conditions are met:
1. Redistributions of source code must retain the above copyright notice, this
list of conditions and the following disclaimer.
list of conditions and the following disclaimer.
2. Redistributions in binary form must reproduce the above copyright notice,
this list of conditions and the following disclaimer in the documentation and/or
other materials provided with the distribution.
1. Redistributions in binary form must reproduce the above copyright notice,
this list of conditions and the following disclaimer in the documentation and/or
other materials provided with the distribution.
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
@@ -286,5 +290,6 @@ ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
(INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
------------------
Code in python/ray/_private/prometheus_exporter.py is adapted from https://github.com/census-instrumentation/opencensus-python/blob/master/contrib/opencensus-ext-prometheus/opencensus/ext/prometheus/stats_exporter/__init__.py
______________________________________________________________________
Code in python/ray/\_private/prometheus_exporter.py is adapted from https://github.com/census-instrumentation/opencensus-python/blob/master/contrib/opencensus-ext-prometheus/opencensus/ext/prometheus/stats_exporter/__init__.py

View File

@@ -1,11 +1,11 @@
[![PyPI version](https://badge.fury.io/py/FLAML.svg)](https://badge.fury.io/py/FLAML)
![Conda version](https://img.shields.io/conda/vn/conda-forge/flaml)
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# A Fast Library for Automated Machine Learning & Tuning
@@ -14,37 +14,40 @@
<br>
</p>
:fire: The automated multi-agent chat framework in [autogen](https://microsoft.github.io/FLAML/docs/Use-Cases/Autogen) is in preview from v2.0.0.
:fire: FLAML supports AutoML and Hyperparameter Tuning in [Microsoft Fabric Data Science](https://learn.microsoft.com/en-us/fabric/data-science/automated-machine-learning-fabric). In addition, we've introduced Python 3.11 support, along with a range of new estimators, and comprehensive integration with MLflow—thanks to contributions from the Microsoft Fabric product team.
:fire: Heads-up: We have migrated [AutoGen](https://microsoft.github.io/autogen/) into a dedicated [github repository](https://github.com/microsoft/autogen). Alongside this move, we have also launched a dedicated [Discord](https://discord.gg/pAbnFJrkgZ) server and a [website](https://microsoft.github.io/autogen/) for comprehensive documentation.
:fire: The automated multi-agent chat framework in [AutoGen](https://microsoft.github.io/autogen/) is in preview from v2.0.0.
:fire: FLAML is highlighted in OpenAI's [cookbook](https://github.com/openai/openai-cookbook#related-resources-from-around-the-web).
:fire: [autogen](https://microsoft.github.io/FLAML/docs/Use-Cases/Autogen) is released with support for ChatGPT and GPT-4, based on [Cost-Effective Hyperparameter Optimization for Large Language Model Generation Inference](https://arxiv.org/abs/2303.04673).
:fire: FLAML supports AutoML and Hyperparameter Tuning features in [Microsoft Fabric](https://learn.microsoft.com/en-us/fabric/get-started/microsoft-fabric-overview) private preview. Sign up for these features at: https://aka.ms/fabric/data-science/sign-up.
:fire: [autogen](https://microsoft.github.io/autogen/) is released with support for ChatGPT and GPT-4, based on [Cost-Effective Hyperparameter Optimization for Large Language Model Generation Inference](https://arxiv.org/abs/2303.04673).
## What is FLAML
FLAML is a lightweight Python library for efficient automation of machine
learning and AI operations. It automates workflow based on large language models, machine learning models, etc.
and optimizes their performance.
* FLAML enables building next-gen GPT-X applications based on multi-agent conversations with minimal effort. It simplifies the orchestration, automation and optimization of a complex GPT-X workflow. It maximizes the performance of GPT-X models and augments their weakness.
* For common machine learning tasks like classification and regression, it quickly finds quality models for user-provided data with low computational resources. It is easy to customize or extend. Users can find their desired customizability from a smooth range.
* It supports fast and economical automatic tuning (e.g., inference hyperparameters for foundation models, configurations in MLOps/LMOps workflows, pipelines, mathematical/statistical models, algorithms, computing experiments, software configurations), capable of handling large search space with heterogeneous evaluation cost and complex constraints/guidance/early stopping.
- FLAML enables building next-gen GPT-X applications based on multi-agent conversations with minimal effort. It simplifies the orchestration, automation and optimization of a complex GPT-X workflow. It maximizes the performance of GPT-X models and augments their weakness.
- For common machine learning tasks like classification and regression, it quickly finds quality models for user-provided data with low computational resources. It is easy to customize or extend. Users can find their desired customizability from a smooth range.
- It supports fast and economical automatic tuning (e.g., inference hyperparameters for foundation models, configurations in MLOps/LMOps workflows, pipelines, mathematical/statistical models, algorithms, computing experiments, software configurations), capable of handling large search space with heterogeneous evaluation cost and complex constraints/guidance/early stopping.
FLAML is powered by a series of [research studies](/docs/Research) from Microsoft Research and collaborators such as Penn State University, Stevens Institute of Technology, University of Washington, and University of Waterloo.
FLAML is powered by a series of [research studies](https://microsoft.github.io/FLAML/docs/Research/) from Microsoft Research and collaborators such as Penn State University, Stevens Institute of Technology, University of Washington, and University of Waterloo.
FLAML has a .NET implementation in [ML.NET](http://dot.net/ml), an open-source, cross-platform machine learning framework for .NET.
## Installation
FLAML requires **Python version >= 3.8**. It can be installed from pip:
FLAML requires **Python version >= 3.9**. It can be installed from pip:
```bash
pip install flaml
```
Minimal dependencies are installed without extra options. You can install extra options based on the feature you need. For example, use the following to install the dependencies needed by the [`autogen`](https://microsoft.github.io/FLAML/docs/Use-Cases/Autogen) package.
Minimal dependencies are installed without extra options. You can install extra options based on the feature you need. For example, use the following to install the dependencies needed by the [`autogen`](https://microsoft.github.io/autogen/) package.
```bash
pip install "flaml[autogen]"
```
@@ -54,18 +57,24 @@ Each of the [`notebook examples`](https://github.com/microsoft/FLAML/tree/main/n
## Quickstart
* (New) The [autogen](https://microsoft.github.io/FLAML/docs/Use-Cases/Autogen) package enables the next-gen GPT-X applications with a generic multi-agent conversation framework.
It offers customizable and conversable agents which integrate LLMs, tools and human.
By automating chat among multiple capable agents, one can easily make them collectively perform tasks autonomously or with human feedback, including tasks that require using tools via code. For example,
- (New) The [autogen](https://microsoft.github.io/autogen/) package enables the next-gen GPT-X applications with a generic multi-agent conversation framework.
It offers customizable and conversable agents which integrate LLMs, tools and human.
By automating chat among multiple capable agents, one can easily make them collectively perform tasks autonomously or with human feedback, including tasks that require using tools via code. For example,
```python
from flaml import autogen
assistant = autogen.AssistantAgent("assistant")
user_proxy = autogen.UserProxyAgent("user_proxy")
user_proxy.initiate_chat(assistant, message="Show me the YTD gain of 10 largest technology companies as of today.")
user_proxy.initiate_chat(
assistant,
message="Show me the YTD gain of 10 largest technology companies as of today.",
)
# This initiates an automated chat between the two agents to solve the task
```
Autogen also helps maximize the utility out of the expensive LLMs such as ChatGPT and GPT-4. It offers a drop-in replacement of `openai.Completion` or `openai.ChatCompletion` with powerful functionalites like tuning, caching, templating, filtering. For example, you can optimize generations by LLM with your own tuning data, success metrics and budgets.
```python
# perform tuning
config, analysis = autogen.Completion.tune(
@@ -80,30 +89,32 @@ config, analysis = autogen.Completion.tune(
# perform inference for a test instance
response = autogen.Completion.create(context=test_instance, **config)
```
* With three lines of code, you can start using this economical and fast
AutoML engine as a [scikit-learn style estimator](https://microsoft.github.io/FLAML/docs/Use-Cases/Task-Oriented-AutoML).
- With three lines of code, you can start using this economical and fast
AutoML engine as a [scikit-learn style estimator](https://microsoft.github.io/FLAML/docs/Use-Cases/Task-Oriented-AutoML).
```python
from flaml import AutoML
automl = AutoML()
automl.fit(X_train, y_train, task="classification")
```
* You can restrict the learners and use FLAML as a fast hyperparameter tuning
tool for XGBoost, LightGBM, Random Forest etc. or a [customized learner](https://microsoft.github.io/FLAML/docs/Use-Cases/Task-Oriented-AutoML#estimator-and-search-space).
- You can restrict the learners and use FLAML as a fast hyperparameter tuning
tool for XGBoost, LightGBM, Random Forest etc. or a [customized learner](https://microsoft.github.io/FLAML/docs/Use-Cases/Task-Oriented-AutoML#estimator-and-search-space).
```python
automl.fit(X_train, y_train, task="classification", estimator_list=["lgbm"])
```
* You can also run generic hyperparameter tuning for a [custom function](https://microsoft.github.io/FLAML/docs/Use-Cases/Tune-User-Defined-Function).
- You can also run generic hyperparameter tuning for a [custom function](https://microsoft.github.io/FLAML/docs/Use-Cases/Tune-User-Defined-Function).
```python
from flaml import tune
tune.run(evaluation_function, config={}, low_cost_partial_config={}, time_budget_s=3600)
```
* [Zero-shot AutoML](https://microsoft.github.io/FLAML/docs/Use-Cases/Zero-Shot-AutoML) allows using the existing training API from lightgbm, xgboost etc. while getting the benefit of AutoML in choosing high-performance hyperparameter configurations per task.
- [Zero-shot AutoML](https://microsoft.github.io/FLAML/docs/Use-Cases/Zero-Shot-AutoML) allows using the existing training API from lightgbm, xgboost etc. while getting the benefit of AutoML in choosing high-performance hyperparameter configurations per task.
```python
from flaml.default import LGBMRegressor
@@ -143,3 +154,9 @@ provided by the bot. You will only need to do this once across all repos using o
This project has adopted the [Microsoft Open Source Code of Conduct](https://opensource.microsoft.com/codeofconduct/).
For more information see the [Code of Conduct FAQ](https://opensource.microsoft.com/codeofconduct/faq/) or
contact [opencode@microsoft.com](mailto:opencode@microsoft.com) with any additional questions or comments.
## Contributors Wall
<a href="https://github.com/microsoft/flaml/graphs/contributors">
<img src="https://contrib.rocks/image?repo=microsoft/flaml&max=204" />
</a>

View File

@@ -4,7 +4,7 @@
Microsoft takes the security of our software products and services seriously, which includes all source code repositories managed through our GitHub organizations, which include [Microsoft](https://github.com/Microsoft), [Azure](https://github.com/Azure), [DotNet](https://github.com/dotnet), [AspNet](https://github.com/aspnet), [Xamarin](https://github.com/xamarin), and [our GitHub organizations](https://opensource.microsoft.com/).
If you believe you have found a security vulnerability in any Microsoft-owned repository that meets [Microsoft's definition of a security vulnerability](https://docs.microsoft.com/en-us/previous-versions/tn-archive/cc751383(v=technet.10)), please report it to us as described below.
If you believe you have found a security vulnerability in any Microsoft-owned repository that meets [Microsoft's definition of a security vulnerability](<https://docs.microsoft.com/en-us/previous-versions/tn-archive/cc751383(v=technet.10)>), please report it to us as described below.
## Reporting Security Issues
@@ -18,13 +18,13 @@ You should receive a response within 24 hours. If for some reason you do not, pl
Please include the requested information listed below (as much as you can provide) to help us better understand the nature and scope of the possible issue:
* Type of issue (e.g. buffer overflow, SQL injection, cross-site scripting, etc.)
* Full paths of source file(s) related to the manifestation of the issue
* The location of the affected source code (tag/branch/commit or direct URL)
* Any special configuration required to reproduce the issue
* Step-by-step instructions to reproduce the issue
* Proof-of-concept or exploit code (if possible)
* Impact of the issue, including how an attacker might exploit the issue
- Type of issue (e.g. buffer overflow, SQL injection, cross-site scripting, etc.)
- Full paths of source file(s) related to the manifestation of the issue
- The location of the affected source code (tag/branch/commit or direct URL)
- Any special configuration required to reproduce the issue
- Step-by-step instructions to reproduce the issue
- Proof-of-concept or exploit code (if possible)
- Impact of the issue, including how an attacker might exploit the issue
This information will help us triage your report more quickly.

View File

@@ -1,10 +1,20 @@
import logging
from flaml.automl import AutoML, logger_formatter
from flaml.tune.searcher import CFO, BlendSearch, FLOW2, BlendSearchTuner, RandomSearch
from flaml.onlineml.autovw import AutoVW
from flaml.version import __version__
import warnings
try:
from flaml.automl import AutoML, logger_formatter
has_automl = True
except ImportError:
has_automl = False
from flaml.onlineml.autovw import AutoVW
from flaml.tune.searcher import CFO, FLOW2, BlendSearch, BlendSearchTuner, RandomSearch
from flaml.version import __version__
# Set the root logger.
logger = logging.getLogger(__name__)
logger.setLevel(logging.INFO)
if logger.level == logging.NOTSET:
logger.setLevel(logging.INFO)
if not has_automl:
warnings.warn("flaml.automl is not available. Please install flaml[automl] to enable AutoML functionalities.")

View File

@@ -1,3 +1,3 @@
from .oai import *
from .agentchat import *
from .code_utils import DEFAULT_MODEL, FAST_MODEL
from .oai import *

View File

@@ -1,12 +1,12 @@
from .agent import Agent
from .responsive_agent import ResponsiveAgent
from .assistant_agent import AssistantAgent
from .user_proxy_agent import UserProxyAgent
from .conversable_agent import ConversableAgent
from .groupchat import GroupChat, GroupChatManager
from .user_proxy_agent import UserProxyAgent
__all__ = [
"Agent",
"ResponsiveAgent",
"ConversableAgent",
"AssistantAgent",
"UserProxyAgent",
"GroupChat",

View File

@@ -25,10 +25,10 @@ class Agent:
return self._name
def send(self, message: Union[Dict, str], recipient: "Agent", request_reply: Optional[bool] = None):
"""(Aabstract method) Send a message to another agent."""
"""(Abstract method) Send a message to another agent."""
async def a_send(self, message: Union[Dict, str], recipient: "Agent", request_reply: Optional[bool] = None):
"""(Aabstract async method) Send a message to another agent."""
"""(Abstract async method) Send a message to another agent."""
def receive(self, message: Union[Dict, str], sender: "Agent", request_reply: Optional[bool] = None):
"""(Abstract method) Receive a message from another agent."""

View File

@@ -1,26 +1,30 @@
from .responsive_agent import ResponsiveAgent
from typing import Callable, Dict, Optional, Union
from .conversable_agent import ConversableAgent
class AssistantAgent(ResponsiveAgent):
"""(In preview) Assistant agent, designed to solve a task with LLM.
AssistantAgent is a subclass of ResponsiveAgent configured with a default system message.
The default system message is designed to solve a task with LLM,
including suggesting python code blocks and debugging.
`human_input_mode` is default to "NEVER"
and `code_execution_config` is default to False.
This agent doesn't execute code by default, and expects the user to execute the code.
class AssistantAgent(ConversableAgent):
"""(In preview) Assistant agent, designed to solve tasks with LLM.
AssistantAgent is a subclass of ConversableAgent configured with a default system message.
The default system message is designed to solve tasks with LLM,
including suggesting Python code blocks and debugging.
`human_input_mode` defaults to "NEVER"
and `code_execution_config` defaults to False.
This agent doesn't execute code by default and expects the user to execute the code.
"""
DEFAULT_SYSTEM_MESSAGE = """You are a helpful AI assistant.
In the following cases, suggest python code (in a python coding block) or shell script (in a sh coding block) for the user to execute. You must indicate the script type in the code block. The user cannot provide any other feedback or perform any other action beyond executing the code you suggest. The user can't modify your code. So do not suggest incomplete code which requires users to modify. Don't use a code block if it's not intended to be executed by the user.
1. When you need to collect info, use the code to output the info you need, for example, browse or search the web, download/read a file, print the content of a webpage or a file, get the current date/time.
2. When you need to perform some task with code, use the code to perform the task and output the result. Finish the task smartly. Solve the task step by step if you need to.
If you want the user to save the code in a file before executing it, put # filename: <filename> inside the code block as the first line. Don't include multiple code blocks in one response. Do not ask users to copy and paste the result. Instead, use 'print' function for the output when relevant. Check the execution result returned by the user.
If the result indicates there is an error, fix the error and output the code again. Suggest the full code instead of partial code or code changes. If the error can't be fixed or if the task is not solved even after the code is executed successfully, analyze the problem, revisit your assumption, collect additional info you need, and think of a different approach to try.
When you find an answer, verify the answer carefully. If a function for planning is provided, call the function to make plans and verify the execution.
Reply "TERMINATE" in the end when everything is done.
Solve tasks using your coding and language skills.
In the following cases, suggest Python code (in a Python coding block) or shell script (in an sh coding block) for the user to execute.
1. When you need to collect info, use the code to output the info you need, for example, browse or search the web, download/read a file, print the content of a webpage or a file, get the current date/time. After sufficient info is printed and the task is ready to be solved based on your language skill, you can solve the task by yourself.
2. When you need to perform some task with code, use the code to perform the task and output the result. Finish the task smartly.
Solve the task step by step if you need to. If a plan is not provided, explain your plan first. Be clear which step uses code, and which step uses your language skill.
When using code, you must indicate the script type in the code block. The user cannot provide any other feedback or perform any other action beyond executing the code you suggest. The user can't modify your code. So do not suggest incomplete code which requires users to modify. Don't use a code block if it's not intended to be executed by the user.
If you want the user to save the code in a file before executing it, put # filename: <filename> inside the code block as the first line. Don't include multiple code blocks in one response. Do not ask users to copy and paste the result. Instead, use the 'print' function for the output when relevant. Check the execution result returned by the user.
If the result indicates there is an error, fix the error and output the code again. Suggest the full code instead of partial code or code changes. If the error can't be fixed or if the task is not solved even after the code is executed successfully, analyze the problem, revisit your assumption, collect additional info you need, and think of a different approach to try.
When you find an answer, verify the answer carefully. Include verifiable evidence in your response if possible.
Reply "TERMINATE" in the end when everything is done.
"""
def __init__(
@@ -32,24 +36,24 @@ class AssistantAgent(ResponsiveAgent):
max_consecutive_auto_reply: Optional[int] = None,
human_input_mode: Optional[str] = "NEVER",
code_execution_config: Optional[Union[Dict, bool]] = False,
**kwargs,
**kwargs: Dict,
):
"""
Args:
name (str): agent name.
system_message (str): system message for the ChatCompletion inference.
Please override this attribute if you want to reprogram the agent.
llm_config (dict): llm inference configuration.
Please refer to [autogen.Completion.create](/docs/reference/autogen/oai/completion#create)
name (str): Agent name.
system_message (Optional[str]): System message for the ChatCompletion inference.
Override this attribute if you want to reprogram the agent.
llm_config (Optional[Union[Dict, bool]]): LLM inference configuration.
Refer to [autogen.Completion.create](/docs/reference/autogen/oai/completion#create)
for available options.
is_termination_msg (function): a function that takes a message in the form of a dictionary
is_termination_msg (Optional[Callable[[Dict], bool]]): A function that takes a message in the form of a dictionary
and returns a boolean value indicating if this received message is a termination message.
The dict can contain the following keys: "content", "role", "name", "function_call".
max_consecutive_auto_reply (int): the maximum number of consecutive auto replies.
default to None (no limit provided, class attribute MAX_CONSECUTIVE_AUTO_REPLY will be used as the limit in this case).
max_consecutive_auto_reply (Optional[int]): The maximum number of consecutive auto replies.
Defaults to None (no limit provided, class attribute MAX_CONSECUTIVE_AUTO_REPLY will be used as the limit in this case).
The limit only plays a role when human_input_mode is not "ALWAYS".
**kwargs (dict): Please refer to other kwargs in
[ResponsiveAgent](responsive_agent#__init__).
**kwargs (Dict): Additional keyword arguments. Refer to other kwargs in
[ConversableAgent](conversable_agent#__init__).
"""
super().__init__(
name,

View File

@@ -1,14 +1,14 @@
import re
import os
from pydantic import BaseModel, Extra, root_validator
from typing import Any, Callable, Dict, List, Optional, Union
import re
from time import sleep
from typing import Any, Callable, Dict, List, Optional, Union
from pydantic import BaseModel, Extra, root_validator
from flaml.autogen.agentchat import Agent, UserProxyAgent
from flaml.autogen.code_utils import UNKNOWN, extract_code, execute_code, infer_lang
from flaml.autogen.code_utils import UNKNOWN, execute_code, extract_code, infer_lang
from flaml.autogen.math_utils import get_answer
PROMPTS = {
# default
"default": """Let's use Python to solve a math problem.
@@ -156,7 +156,7 @@ class MathUserProxyAgent(UserProxyAgent):
when the number of auto reply reaches the max_consecutive_auto_reply or when is_termination_msg is True.
default_auto_reply (str or dict or None): the default auto reply message when no code execution or llm based reply is generated.
max_invalid_q_per_step (int): (ADDED) the maximum number of invalid queries per step.
**kwargs (dict): other kwargs in [UserProxyAgent](user_proxy_agent#__init__).
**kwargs (dict): other kwargs in [UserProxyAgent](../user_proxy_agent#__init__).
"""
super().__init__(
name=name,
@@ -165,7 +165,7 @@ class MathUserProxyAgent(UserProxyAgent):
default_auto_reply=default_auto_reply,
**kwargs,
)
self.register_auto_reply(Agent, MathUserProxyAgent._generate_math_reply, 1)
self.register_reply([Agent, None], MathUserProxyAgent._generate_math_reply, 1)
# fixed var
self._max_invalid_q_per_step = max_invalid_q_per_step

View File

@@ -1,6 +1,7 @@
from typing import Any, Callable, Dict, List, Optional, Tuple, Union
from flaml.autogen.agentchat.agent import Agent
from flaml.autogen.agentchat.assistant_agent import AssistantAgent
from typing import Callable, Dict, Optional, Union, List, Tuple, Any
class RetrieveAssistantAgent(AssistantAgent):
@@ -16,7 +17,7 @@ class RetrieveAssistantAgent(AssistantAgent):
def __init__(self, *args, **kwargs):
super().__init__(*args, **kwargs)
self.register_auto_reply(Agent, RetrieveAssistantAgent._generate_retrieve_assistant_reply)
self.register_reply(Agent, RetrieveAssistantAgent._generate_retrieve_assistant_reply)
def _generate_retrieve_assistant_reply(
self,

View File

@@ -1,12 +1,13 @@
import chromadb
from flaml.autogen.agentchat.agent import Agent
from flaml.autogen.agentchat import UserProxyAgent
from flaml.autogen.retrieve_utils import create_vector_db_from_dir, query_vector_db, num_tokens_from_text
from flaml.autogen.code_utils import extract_code
from typing import Any, Callable, Dict, List, Optional, Tuple, Union
from typing import Callable, Dict, Optional, Union, List, Tuple, Any
import chromadb
from IPython import get_ipython
from flaml.autogen.agentchat import UserProxyAgent
from flaml.autogen.agentchat.agent import Agent
from flaml.autogen.code_utils import extract_code
from flaml.autogen.retrieve_utils import create_vector_db_from_dir, num_tokens_from_text, query_vector_db
try:
from termcolor import colored
except ImportError:
@@ -122,7 +123,7 @@ class RetrieveUserProxyAgent(UserProxyAgent):
can be found at `https://www.sbert.net/docs/pretrained_models.html`. The default model is a
fast model. If you want to use a high performance model, `all-mpnet-base-v2` is recommended.
- customized_prompt (Optional, str): the customized prompt for the retrieve chat. Default is None.
**kwargs (dict): other kwargs in [UserProxyAgent](user_proxy_agent#__init__).
**kwargs (dict): other kwargs in [UserProxyAgent](../user_proxy_agent#__init__).
"""
super().__init__(
name=name,
@@ -148,7 +149,7 @@ class RetrieveUserProxyAgent(UserProxyAgent):
self._ipython = get_ipython()
self._doc_idx = -1 # the index of the current used doc
self._results = {} # the results of the current query
self.register_auto_reply(Agent, RetrieveUserProxyAgent._generate_retrieve_user_reply)
self.register_reply(Agent, RetrieveUserProxyAgent._generate_retrieve_user_reply)
@staticmethod
def get_max_tokens(model="gpt-3.5-turbo"):

View File

@@ -1,10 +1,10 @@
import asyncio
from collections import defaultdict
import copy
import json
from collections import defaultdict
from typing import Any, Callable, Dict, List, Optional, Tuple, Type, Union
from flaml.autogen import oai
from .agent import Agent
from flaml.autogen.code_utils import (
DEFAULT_MODEL,
UNKNOWN,
@@ -13,6 +13,8 @@ from flaml.autogen.code_utils import (
infer_lang,
)
from .agent import Agent
try:
from termcolor import colored
except ImportError:
@@ -21,11 +23,11 @@ except ImportError:
return x
class ResponsiveAgent(Agent):
"""(Experimental) A class for generic responsive agents which can be configured as assistant or user proxy.
class ConversableAgent(Agent):
"""(In preview) A class for generic conversable agents which can be configured as assistant or user proxy.
After receiving each message, the agent will send a reply to the sender unless the msg is a termination msg.
For example, AssistantAgent and UserProxyAgent are subclasses of ResponsiveAgent,
For example, AssistantAgent and UserProxyAgent are subclasses of this class,
configured with different default settings.
To modify auto reply, override `generate_reply` method.
@@ -119,12 +121,12 @@ class ResponsiveAgent(Agent):
self._default_auto_reply = default_auto_reply
self._reply_func_list = []
self.reply_at_receive = defaultdict(bool)
self.register_auto_reply(Agent, ResponsiveAgent.generate_oai_reply)
self.register_auto_reply(Agent, ResponsiveAgent.generate_code_execution_reply)
self.register_auto_reply(Agent, ResponsiveAgent.generate_function_call_reply)
self.register_auto_reply(Agent, ResponsiveAgent.check_termination_and_human_reply)
self.register_reply([Agent, None], ConversableAgent.generate_oai_reply)
self.register_reply([Agent, None], ConversableAgent.generate_code_execution_reply)
self.register_reply([Agent, None], ConversableAgent.generate_function_call_reply)
self.register_reply([Agent, None], ConversableAgent.check_termination_and_human_reply)
def register_auto_reply(
def register_reply(
self,
trigger: Union[Type[Agent], str, Agent, Callable[[Agent], bool], List],
reply_func: Callable,
@@ -145,11 +147,13 @@ class ResponsiveAgent(Agent):
- If an agent instance is provided, the reply function will be called when the sender is the agent instance.
- If a callable is provided, the reply function will be called when the callable returns True.
- If a list is provided, the reply function will be called when any of the triggers in the list is activated.
- If None is provided, the reply function will be called only when the sender is None.
Note: Be sure to register `None` as a trigger if you would like to trigger an auto-reply function with non-empty messages and `sender=None`.
reply_func (Callable): the reply function.
The function takes a recipient agent, a list of messages, a sender agent and a config as input and returns a reply message.
```python
def reply_func(
recipient: ResponsiveAgent,
recipient: ConversableAgent,
messages: Optional[List[Dict]] = None,
sender: Optional[Agent] = None,
config: Optional[Any] = None,
@@ -497,7 +501,7 @@ class ResponsiveAgent(Agent):
def initiate_chat(
self,
recipient: "ResponsiveAgent",
recipient: "ConversableAgent",
clear_history: Optional[bool] = True,
silent: Optional[bool] = False,
**context,
@@ -520,7 +524,7 @@ class ResponsiveAgent(Agent):
async def a_initiate_chat(
self,
recipient: "ResponsiveAgent",
recipient: "ConversableAgent",
clear_history: Optional[bool] = True,
silent: Optional[bool] = False,
**context,
@@ -609,7 +613,7 @@ class ResponsiveAgent(Agent):
if messages is None:
messages = self._oai_messages[sender]
last_n_messages = code_execution_config.pop("last_n_messages", 1)
for i in range(last_n_messages):
for i in range(min(len(messages), last_n_messages)):
message = messages[-(i + 1)]
code_blocks = extract_code(message["content"])
if len(code_blocks) == 1 and code_blocks[0][0] == UNKNOWN:
@@ -726,6 +730,7 @@ class ResponsiveAgent(Agent):
"""Reply based on the conversation history and the sender.
Either messages or sender must be provided.
Register a reply_func with `None` as one trigger for it to be activated when `messages` is non-empty and `sender` is `None`.
Use registered auto reply functions to generate replies.
By default, the following functions are checked in order:
1. check_termination_and_human_reply
@@ -748,17 +753,19 @@ class ResponsiveAgent(Agent):
str or dict or None: reply. None if no reply is generated.
"""
assert messages is not None or sender is not None, "Either messages or sender must be provided."
if sender is not None:
for reply_func_tuple in self._reply_func_list:
reply_func = reply_func_tuple["reply_func"]
if exclude and reply_func in exclude:
continue
if asyncio.coroutines.iscoroutinefunction(reply_func):
continue
if self._match_trigger(reply_func_tuple["trigger"], sender):
final, reply = reply_func(self, messages=messages, sender=sender, config=reply_func_tuple["config"])
if final:
return reply
if messages is None:
messages = self._oai_messages[sender]
for reply_func_tuple in self._reply_func_list:
reply_func = reply_func_tuple["reply_func"]
if exclude and reply_func in exclude:
continue
if asyncio.coroutines.iscoroutinefunction(reply_func):
continue
if self._match_trigger(reply_func_tuple["trigger"], sender):
final, reply = reply_func(self, messages=messages, sender=sender, config=reply_func_tuple["config"])
if final:
return reply
return self._default_auto_reply
async def a_generate_reply(
@@ -770,6 +777,7 @@ class ResponsiveAgent(Agent):
"""(async) Reply based on the conversation history and the sender.
Either messages or sender must be provided.
Register a reply_func with `None` as one trigger for it to be activated when `messages` is non-empty and `sender` is `None`.
Use registered auto reply functions to generate replies.
By default, the following functions are checked in order:
1. check_termination_and_human_reply
@@ -792,27 +800,29 @@ class ResponsiveAgent(Agent):
str or dict or None: reply. None if no reply is generated.
"""
assert messages is not None or sender is not None, "Either messages or sender must be provided."
if sender is not None:
for reply_func_tuple in self._reply_func_list:
reply_func = reply_func_tuple["reply_func"]
if exclude and reply_func in exclude:
continue
if self._match_trigger(reply_func_tuple["trigger"], sender):
if asyncio.coroutines.iscoroutinefunction(reply_func):
final, reply = await reply_func(
self, messages=messages, sender=sender, config=reply_func_tuple["config"]
)
else:
final, reply = reply_func(
self, messages=messages, sender=sender, config=reply_func_tuple["config"]
)
if final:
return reply
if messages is None:
messages = self._oai_messages[sender]
for reply_func_tuple in self._reply_func_list:
reply_func = reply_func_tuple["reply_func"]
if exclude and reply_func in exclude:
continue
if self._match_trigger(reply_func_tuple["trigger"], sender):
if asyncio.coroutines.iscoroutinefunction(reply_func):
final, reply = await reply_func(
self, messages=messages, sender=sender, config=reply_func_tuple["config"]
)
else:
final, reply = reply_func(self, messages=messages, sender=sender, config=reply_func_tuple["config"])
if final:
return reply
return self._default_auto_reply
def _match_trigger(self, trigger, sender):
"""Check if the sender matches the trigger."""
if isinstance(trigger, str):
if trigger is None:
return sender is None
elif isinstance(trigger, str):
return trigger == sender.name
elif isinstance(trigger, type):
return isinstance(sender, trigger)
@@ -887,10 +897,11 @@ class ResponsiveAgent(Agent):
exitcode, logs, image = (
1,
f"unknown language {lang}",
self._code_execution_config["use_docker"],
None,
)
# raise NotImplementedError
self._code_execution_config["use_docker"] = image
if image is not None:
self._code_execution_config["use_docker"] = image
logs_all += "\n" + logs
if exitcode != 0:
return exitcode, logs_all
@@ -953,7 +964,7 @@ class ResponsiveAgent(Agent):
content = f"Error: {e}\n You argument should follow json format."
# Try to execute the function
if arguments:
if arguments is not None:
print(
colored(f"\n>>>>>>>> EXECUTING FUNCTION {func_name}...", "magenta"),
flush=True,

View File

@@ -1,8 +1,9 @@
from dataclasses import dataclass
import sys
from dataclasses import dataclass
from typing import Dict, List, Optional, Union
from .agent import Agent
from .responsive_agent import ResponsiveAgent
from .conversable_agent import ConversableAgent
@dataclass
@@ -12,6 +13,7 @@ class GroupChat:
agents: List[Agent]
messages: List[Dict]
max_round: int = 10
admin_name: str = "Admin" # the name of the admin agent
@property
def agent_names(self) -> List[str]:
@@ -38,10 +40,18 @@ class GroupChat:
Read the following conversation.
Then select the next role from {self.agent_names} to play. Only return the role."""
def select_speaker(self, last_speaker: Agent, selctor: ResponsiveAgent):
def select_speaker(self, last_speaker: Agent, selector: ConversableAgent):
"""Select the next speaker."""
selctor.update_system_message(self.select_speaker_msg())
final, name = selctor.generate_oai_reply(self.messages)
selector.update_system_message(self.select_speaker_msg())
final, name = selector.generate_oai_reply(
self.messages
+ [
{
"role": "system",
"content": f"Read the above conversation. Then select the next role from {self.agent_names} to play. Only return the role.",
}
]
)
if not final:
# i = self._random.randint(0, len(self._agent_names) - 1) # randomly pick an id
return self.next_agent(last_speaker)
@@ -54,8 +64,8 @@ Then select the next role from {self.agent_names} to play. Only return the role.
return "\n".join([f"{agent.name}: {agent.system_message}" for agent in self.agents])
class GroupChatManager(ResponsiveAgent):
"""(WIP) A chat manager agent that can manage a group chat of multiple agents."""
class GroupChatManager(ConversableAgent):
"""(In preview) A chat manager agent that can manage a group chat of multiple agents."""
def __init__(
self,
@@ -75,7 +85,7 @@ class GroupChatManager(ResponsiveAgent):
system_message=system_message,
**kwargs,
)
self.register_auto_reply(Agent, GroupChatManager.run_chat, config=groupchat, reset_config=GroupChat.reset)
self.register_reply(Agent, GroupChatManager.run_chat, config=groupchat, reset_config=GroupChat.reset)
# self._random = random.Random(seed)
def run_chat(
@@ -89,21 +99,36 @@ class GroupChatManager(ResponsiveAgent):
messages = self._oai_messages[sender]
message = messages[-1]
speaker = sender
for i in range(config.max_round):
groupchat = config
for i in range(groupchat.max_round):
# set the name to speaker's name if the role is not function
if message["role"] != "function":
message["name"] = speaker.name
config.messages.append(message)
groupchat.messages.append(message)
# broadcast the message to all agents except the speaker
for agent in config.agents:
for agent in groupchat.agents:
if agent != speaker:
self.send(message, agent, request_reply=False, silent=True)
if i != config.max_round - 1:
# speaker selection msg from an agent
speaker = config.select_speaker(speaker, self)
if i == groupchat.max_round - 1:
# the last round
break
try:
# select the next speaker
speaker = groupchat.select_speaker(speaker, self)
# let the speaker speak
reply = speaker.generate_reply(sender=self)
if reply is None:
break
speaker.send(reply, self, request_reply=False)
message = self.last_message(speaker)
except KeyboardInterrupt:
# let the admin agent speak if interrupted
if groupchat.admin_name in groupchat.agent_names:
# admin agent is one of the participants
speaker = groupchat.agent_by_name(groupchat.admin_name)
reply = speaker.generate_reply(sender=self)
else:
# admin agent is not found in the participants
raise
if reply is None:
break
# The speaker sends the message without requesting a reply
speaker.send(reply, self, request_reply=False)
message = self.last_message(speaker)
return True, None

View File

@@ -1,14 +1,15 @@
from .responsive_agent import ResponsiveAgent
from typing import Callable, Dict, Optional, Union
from .conversable_agent import ConversableAgent
class UserProxyAgent(ResponsiveAgent):
class UserProxyAgent(ConversableAgent):
"""(In preview) A proxy agent for the user, that can execute code and provide feedback to the other agents.
UserProxyAgent is a subclass of ResponsiveAgent configured with `human_input_mode` to ALWAYS
UserProxyAgent is a subclass of ConversableAgent configured with `human_input_mode` to ALWAYS
and `llm_config` to False. By default, the agent will prompt for human input every time a message is received.
Code execution is enabled by default. LLM-based auto reply is disabled by default.
To modify auto reply, register a method with (`register_auto_reply`)[responsive_agent#register_auto_reply].
To modify auto reply, register a method with (`register_reply`)[conversable_agent#register_reply].
To modify the way to get human input, override `get_human_input` method.
To modify the way to execute code blocks, single code block, or function call, override `execute_code_blocks`,
`run_code`, and `execute_function` methods respectively.

View File

@@ -1,13 +1,14 @@
import logging
import os
import pathlib
import re
import signal
import subprocess
import sys
import os
import pathlib
from typing import List, Dict, Tuple, Optional, Union, Callable
import re
import time
from hashlib import md5
import logging
from typing import Callable, Dict, List, Optional, Tuple, Union
from flaml.autogen import oai
try:
@@ -124,7 +125,7 @@ def improve_function(file_name, func_name, objective, **config):
"""(work in progress) Improve the function to achieve the objective."""
params = {**_IMPROVE_FUNCTION_CONFIG, **config}
# read the entire file into a str
with open(file_name, "r") as f:
with open(file_name) as f:
file_string = f.read()
response = oai.Completion.create(
{"func_name": func_name, "objective": objective, "file_string": file_string}, **params
@@ -157,7 +158,7 @@ def improve_code(files, objective, suggest_only=True, **config):
code = ""
for file_name in files:
# read the entire file into a string
with open(file_name, "r") as f:
with open(file_name) as f:
file_string = f.read()
code += f"""{file_name}:
{file_string}
@@ -347,9 +348,9 @@ def execute_code(
# extract the exit code from the logs
pattern = re.compile(f"{exit_code_str}(\\d+){exit_code_str}")
match = pattern.search(logs)
exit_code = int(match.group(1))
exit_code = 1 if match is None else int(match.group(1))
# remove the exit code from the logs
logs = pattern.sub("", logs)
logs = logs if match is None else pattern.sub("", logs)
if original_filename is None:
os.remove(filepath)

View File

@@ -1,5 +1,6 @@
from typing import Optional
from flaml.autogen import oai, DEFAULT_MODEL
from flaml.autogen import DEFAULT_MODEL, oai
_MATH_PROMPT = "{problem} Solve the problem carefully. Simplify your answer as much as possible. Put the final answer in \\boxed{{}}."
_MATH_CONFIG = {
@@ -129,7 +130,7 @@ def _fix_a_slash_b(string: str) -> str:
try:
a = int(a_str)
b = int(b_str)
assert string == "{}/{}".format(a, b)
assert string == f"{a}/{b}"
new_string = "\\frac{" + str(a) + "}{" + str(b) + "}"
return new_string
except Exception:

View File

@@ -1,10 +1,10 @@
from flaml.autogen.oai.completion import Completion, ChatCompletion
from flaml.autogen.oai.completion import ChatCompletion, Completion
from flaml.autogen.oai.openai_utils import (
get_config_list,
config_list_from_json,
config_list_from_models,
config_list_gpt4_gpt35,
config_list_openai_aoai,
config_list_from_models,
config_list_from_json,
get_config_list,
)
__all__ = [

View File

@@ -1,28 +1,31 @@
from time import sleep
import logging
import time
from typing import List, Optional, Dict, Callable, Union
import sys
import shutil
import sys
import time
from time import sleep
from typing import Callable, Dict, List, Optional, Union
import numpy as np
from flaml import tune, BlendSearch
from flaml.tune.space import is_constant
from flaml import BlendSearch, tune
from flaml.automl.logger import logger_formatter
from flaml.tune.space import is_constant
from .openai_utils import get_key
try:
import openai
from openai.error import (
ServiceUnavailableError,
RateLimitError,
APIError,
InvalidRequestError,
APIConnectionError,
Timeout,
AuthenticationError,
)
from openai import Completion as openai_Completion
import diskcache
import openai
from openai import Completion as openai_Completion
from openai.error import (
APIConnectionError,
APIError,
AuthenticationError,
InvalidRequestError,
RateLimitError,
ServiceUnavailableError,
Timeout,
)
ERROR = None
except ImportError:
@@ -48,6 +51,7 @@ class Completion(openai_Completion):
"gpt-3.5-turbo-0301", # deprecate in Sep
"gpt-3.5-turbo-0613",
"gpt-3.5-turbo-16k",
"gpt-3.5-turbo-16k-0613",
"gpt-35-turbo",
"gpt-4",
"gpt-4-32k",
@@ -70,6 +74,7 @@ class Completion(openai_Completion):
"gpt-3.5-turbo-0301": (0.0015, 0.002), # deprecate in Sep
"gpt-3.5-turbo-0613": (0.0015, 0.002),
"gpt-3.5-turbo-16k": (0.003, 0.004),
"gpt-3.5-turbo-16k-0613": (0.003, 0.004),
"gpt-35-turbo": 0.002,
"gpt-4": (0.03, 0.06),
"gpt-4-32k": (0.06, 0.12),
@@ -695,7 +700,7 @@ class Completion(openai_Completion):
E.g., `prompt="Complete the following sentence: {prefix}, context={"prefix": "Today I feel"}`.
The actual prompt will be:
"Complete the following sentence: Today I feel".
More examples can be found at [templating](/docs/Use-Cases/Autogen#templating).
More examples can be found at [templating](https://microsoft.github.io/autogen/docs/Use-Cases/enhanced_inference#templating).
use_cache (bool, Optional): Whether to use cached responses.
config_list (List, Optional): List of configurations for the completion to try.
The first one that does not raise an error will be used.
@@ -746,7 +751,11 @@ class Completion(openai_Completion):
Also, the "prompt" or "messages" parameter can contain a template (str or Callable) which will be instantiated with the context.
Returns:
Responses from OpenAI API.
Responses from OpenAI API, with additional fields.
- `cost`: the total cost.
When `config_list` is provided, the response will contain a few more fields:
- `config_id`: the index of the config in the config_list that is used to generate the response.
- `pass_filter`: whether the response passes the filter function. None if no filter is provided.
"""
if ERROR:
raise ERROR

View File

@@ -1,7 +1,7 @@
import os
import json
from typing import List, Optional, Dict, Set, Union
import logging
import os
from typing import Dict, List, Optional, Set, Union
NON_CACHE_KEY = ["api_key", "api_base", "api_type", "api_version"]

View File

@@ -1,13 +1,14 @@
from typing import List, Union, Dict, Tuple
import os
import requests
from urllib.parse import urlparse
import glob
import tiktoken
import chromadb
from chromadb.api import API
import chromadb.utils.embedding_functions as ef
import logging
import os
from typing import Dict, List, Tuple, Union
from urllib.parse import urlparse
import chromadb
import chromadb.utils.embedding_functions as ef
import requests
import tiktoken
from chromadb.api import API
logger = logging.getLogger(__name__)
TEXT_FORMATS = ["txt", "json", "csv", "tsv", "md", "html", "htm", "rtf", "rst", "jsonl", "log", "xml", "yaml", "yml"]
@@ -125,7 +126,7 @@ def split_files_to_chunks(
"""Split a list of files into chunks of max_tokens."""
chunks = []
for file in files:
with open(file, "r") as f:
with open(file) as f:
text = f.read()
chunks += split_text_to_chunks(text, max_tokens, chunk_mode, must_break_at_empty_line)
return chunks

View File

@@ -1,5 +1,9 @@
from flaml.automl.automl import AutoML, size
from flaml.automl.logger import logger_formatter
from flaml.automl.state import SearchState, AutoMLState
__all__ = ["AutoML", "AutoMLState", "SearchState", "logger_formatter", "size"]
try:
from flaml.automl.automl import AutoML, size
from flaml.automl.state import AutoMLState, SearchState
__all__ = ["AutoML", "AutoMLState", "SearchState", "logger_formatter", "size"]
except ImportError:
__all__ = ["logger_formatter"]

View File

@@ -3,40 +3,43 @@
# * Licensed under the MIT License. See LICENSE file in the
# * project root for license information.
from __future__ import annotations
import time
import os
import sys
from typing import Callable, List, Union, Optional
from functools import partial
import numpy as np
import logging
import json
import logging
import os
import random
import sys
import time
from concurrent.futures import as_completed
from functools import partial
from typing import Callable, List, Optional, Union
from flaml.automl.state import SearchState, AutoMLState
from flaml.automl.ml import train_estimator
import numpy as np
from flaml.automl.time_series import TimeSeriesDataset
from flaml.config import (
MIN_SAMPLE_TRAIN,
MEM_THRES,
RANDOM_SEED,
SMALL_LARGE_THRES,
CV_HOLDOUT_THRESHOLD,
SPLIT_RATIO,
N_SPLITS,
SAMPLE_MULTIPLY_FACTOR,
)
from flaml import tune
from flaml.automl.logger import logger, logger_formatter
from flaml.automl.ml import huggingface_metric_to_mode, sklearn_metric_name_set, spark_metric_name_dict, train_estimator
from flaml.automl.spark import DataFrame, Series, psDataFrame, psSeries
from flaml.automl.state import AutoMLState, SearchState
from flaml.automl.task.factory import task_factory
# TODO check to see when we can remove these
from flaml.automl.task.task import CLASSIFICATION, Task
from flaml.automl.task.factory import task_factory
from flaml import tune
from flaml.automl.logger import logger, logger_formatter
from flaml.automl.time_series import TimeSeriesDataset
from flaml.automl.training_log import training_log_reader, training_log_writer
from flaml.config import (
CV_HOLDOUT_THRESHOLD,
MEM_THRES,
MIN_SAMPLE_TRAIN,
N_SPLITS,
RANDOM_SEED,
SAMPLE_MULTIPLY_FACTOR,
SMALL_LARGE_THRES,
SPLIT_RATIO,
)
from flaml.default import suggest_learner
from flaml.version import __version__ as flaml_version
from flaml.automl.spark import psDataFrame, psSeries, DataFrame, Series
from flaml.tune.spark.utils import check_spark, get_broadcast_data
from flaml.version import __version__ as flaml_version
ERROR = (
DataFrame is None and ImportError("please install flaml[automl] option to use the flaml.automl package.") or None
@@ -44,6 +47,7 @@ ERROR = (
try:
from sklearn.base import BaseEstimator
from sklearn.pipeline import Pipeline
except ImportError:
BaseEstimator = object
ERROR = ERROR or ImportError("please install flaml[automl] option to use the flaml.automl package.")
@@ -53,6 +57,14 @@ try:
except ImportError:
mlflow = None
try:
from flaml.fabric.mlflow import MLflowIntegration, get_mlflow_log_latency, infer_signature, is_autolog_enabled
internal_mlflow = True
except ImportError:
internal_mlflow = False
try:
from ray import __version__ as ray_version
@@ -170,15 +182,22 @@ class AutoML(BaseEstimator):
'better' only logs configs with better loss than previos iters
'all' logs all the tried configs.
model_history: A boolean of whether to keep the best
model per estimator. Make sure memory is large enough if setting to True.
model per estimator. Make sure memory is large enough if setting to True. Default False.
log_training_metric: A boolean of whether to log the training
metric for each model.
mem_thres: A float of the memory size constraint in bytes.
pred_time_limit: A float of the prediction latency constraint in seconds.
It refers to the average prediction time per row in validation data.
train_time_limit: A float of the training time constraint in seconds.
train_time_limit: None or a float of the training time constraint in seconds for each trial.
Only valid for sequential search.
verbose: int, default=3 | Controls the verbosity, higher means more
messages.
verbose=0: logger level = CRITICAL
verbose=1: logger level = ERROR
verbose=2: logger level = WARNING
verbose=3: logger level = INFO
verbose=4: logger level = DEBUG
verbose>5: logger level = NOTSET
retrain_full: bool or str, default=True | whether to retrain the
selected model on the full training data when using holdout.
True - retrain only after search finishes; False - no retraining;
@@ -192,7 +211,7 @@ class AutoML(BaseEstimator):
* Valid str options depend on different tasks.
For classification tasks, valid choices are
["auto", 'stratified', 'uniform', 'time', 'group']. "auto" -> stratified.
For regression tasks, valid choices are ["auto", 'uniform', 'time'].
For regression tasks, valid choices are ["auto", 'uniform', 'time', 'group'].
"auto" -> uniform.
For time series forecast tasks, must be "auto" or 'time'.
For ranking task, must be "auto" or 'group'.
@@ -211,9 +230,9 @@ class AutoML(BaseEstimator):
- if "data:path" use data-dependent defaults which are stored at path;
- if "static", use data-independent defaults.
If dict, keys are the name of the estimators, and values are the starting
hyperparamter configurations for the corresponding estimators.
The value can be a single hyperparamter configuration dict or a list
of hyperparamter configuration dicts.
hyperparameter configurations for the corresponding estimators.
The value can be a single hyperparameter configuration dict or a list
of hyperparameter configuration dicts.
In the following code example, we get starting_points from the
`automl` object and use them in the `new_automl` object.
e.g.,
@@ -246,6 +265,9 @@ class AutoML(BaseEstimator):
search is considered to converge.
force_cancel: boolean, default=False | Whether to forcely cancel Spark jobs if the
search time exceeded the time budget.
mlflow_exp_name: str, default=None | The name of the mlflow experiment. This should be specified if
enable mlflow autologging on Spark. Otherwise it will log all the results into the experiment of the
same name as the basename of main entry file.
append_log: boolean, default=False | Whetehr to directly append the log
records to the input log file if it exists.
auto_augment: boolean, default=True | Whether to automatically
@@ -319,9 +341,7 @@ class AutoML(BaseEstimator):
}
}
```
mlflow_logging: boolean, default=True | Whether to log the training results to mlflow.
This requires mlflow to be installed and to have an active mlflow run.
FLAML will create nested runs.
mlflow_logging: boolean, default=True | Whether to log the training results to mlflow. Not valid if mlflow is not installed.
"""
if ERROR:
@@ -330,6 +350,8 @@ class AutoML(BaseEstimator):
self._state = AutoMLState()
self._state.learner_classes = {}
self._settings = settings
self._automl_user_configurations = settings.copy()
self._settings.pop("automl_user_configurations", None)
# no budget by default
settings["time_budget"] = settings.get("time_budget", -1)
settings["task"] = settings.get("task", "classification")
@@ -361,6 +383,7 @@ class AutoML(BaseEstimator):
settings["preserve_checkpoint"] = settings.get("preserve_checkpoint", True)
settings["early_stop"] = settings.get("early_stop", False)
settings["force_cancel"] = settings.get("force_cancel", False)
settings["mlflow_exp_name"] = settings.get("mlflow_exp_name", None)
settings["append_log"] = settings.get("append_log", False)
settings["min_sample_size"] = settings.get("min_sample_size", MIN_SAMPLE_TRAIN)
settings["use_ray"] = settings.get("use_ray", False)
@@ -376,6 +399,7 @@ class AutoML(BaseEstimator):
settings["mlflow_logging"] = settings.get("mlflow_logging", True)
self._estimator_type = "classifier" if settings["task"] in CLASSIFICATION else "regressor"
self.best_run_id = None
def get_params(self, deep: bool = False) -> dict:
return self._settings.copy()
@@ -408,6 +432,8 @@ class AutoML(BaseEstimator):
If `model_history` was set to True, then the returned model is trained.
"""
state = self._search_states.get(estimator_name)
if state and estimator_name == self._best_estimator:
return self.model
return state and getattr(state, "trained_estimator", None)
@property
@@ -474,10 +500,25 @@ class AutoML(BaseEstimator):
with open(filename, "w") as f:
json.dump(best, f)
@property
def supported_metrics(self):
"""
Returns a tuple of supported metrics for the task.
Returns:
metrics (Tuple): sklearn metrics from sklearn package;
huggingface metrics from datasets package;
spark metrics from pyspark package
"""
return sklearn_metric_name_set, huggingface_metric_to_mode.keys(), spark_metric_name_dict
@property
def feature_transformer(self):
"""Returns AutoML Transformer"""
return getattr(self, "_transformer", None)
data_precessor = getattr(self, "_transformer", None)
return data_precessor
@property
def label_transformer(self):
@@ -520,8 +561,8 @@ class AutoML(BaseEstimator):
def score(
self,
X: Union[DataFrame, psDataFrame],
y: Union[Series, psSeries],
X: DataFrame | psDataFrame,
y: Series | psSeries,
**kwargs,
):
estimator = getattr(self, "_trained_estimator", None)
@@ -535,7 +576,7 @@ class AutoML(BaseEstimator):
def predict(
self,
X: Union[np.array, DataFrame, List[str], List[List[str]], psDataFrame],
X: np.array | DataFrame | list[str] | list[list[str]] | psDataFrame,
**pred_kwargs,
):
"""Predict label from features.
@@ -606,11 +647,11 @@ class AutoML(BaseEstimator):
Args:
learner_name: A string of the learner's name.
learner_class: A subclass of flaml.model.BaseEstimator.
learner_class: A subclass of flaml.automl.model.BaseEstimator.
"""
self._state.learner_classes[learner_name] = learner_class
def get_estimator_from_log(self, log_file_name: str, record_id: int, task: Union[str, Task]):
def get_estimator_from_log(self, log_file_name: str, record_id: int, task: str | Task):
"""Get the estimator from log file.
Args:
@@ -652,7 +693,7 @@ class AutoML(BaseEstimator):
dataframe=None,
label=None,
time_budget=np.inf,
task: Optional[Union[str, Task]] = None,
task: str | Task | None = None,
eval_method=None,
split_ratio=None,
n_splits=None,
@@ -708,7 +749,7 @@ class AutoML(BaseEstimator):
* Valid str options depend on different tasks.
For classification tasks, valid choices are
["auto", 'stratified', 'uniform', 'time', 'group']. "auto" -> stratified.
For regression tasks, valid choices are ["auto", 'uniform', 'time'].
For regression tasks, valid choices are ["auto", 'uniform', 'time', 'group'].
"auto" -> uniform.
For time series forecast tasks, must be "auto" or 'time'.
For ranking task, must be "auto" or 'group'.
@@ -778,7 +819,7 @@ class AutoML(BaseEstimator):
max_epochs: int, default = 20 | Maximum number of epochs to run training,
only used by TemporalFusionTransformerEstimator.
batch_size: int, default = 64 | Batch size for training model, only
used by TemporalFusionTransformerEstimator.
used by TemporalFusionTransformerEstimator and TCNEstimator.
"""
task = task or self._settings.get("task")
if isinstance(task, str):
@@ -801,7 +842,7 @@ class AutoML(BaseEstimator):
)
task.validate_data(self, self._state, X_train, y_train, dataframe, label, groups=groups)
logger.info("log file name {}".format(log_file_name))
logger.info(f"log file name {log_file_name}")
best_config = None
best_val_loss = float("+inf")
@@ -854,9 +895,7 @@ class AutoML(BaseEstimator):
else:
self._state.fit_kwargs_by_estimator[best_estimator] = self._state.fit_kwargs
logger.info(
"estimator = {}, config = {}, #training instances = {}".format(best_estimator, best_config, sample_size)
)
logger.info(f"estimator = {best_estimator}, config = {best_config}, #training instances = {sample_size}")
# Partially copied from fit() function
# Initilize some attributes required for retrain_from_log
self._split_type = task.decide_split_type(
@@ -1027,7 +1066,7 @@ class AutoML(BaseEstimator):
return points
@property
def resource_attr(self) -> Optional[str]:
def resource_attr(self) -> str | None:
"""Attribute of the resource dimension.
Returns:
@@ -1037,7 +1076,7 @@ class AutoML(BaseEstimator):
return "FLAML_sample_size" if self._sample else None
@property
def min_resource(self) -> Optional[float]:
def min_resource(self) -> float | None:
"""Attribute for pruning.
Returns:
@@ -1046,7 +1085,7 @@ class AutoML(BaseEstimator):
return self._min_sample_size if self._sample else None
@property
def max_resource(self) -> Optional[float]:
def max_resource(self) -> float | None:
"""Attribute for pruning.
Returns:
@@ -1068,7 +1107,7 @@ class AutoML(BaseEstimator):
pickle.dump(self, f, pickle.HIGHEST_PROTOCOL)
@property
def trainable(self) -> Callable[[dict], Optional[float]]:
def trainable(self) -> Callable[[dict], float | None]:
"""Training function.
Returns:
A function that evaluates each config and returns the loss.
@@ -1154,7 +1193,7 @@ class AutoML(BaseEstimator):
dataframe=None,
label=None,
metric=None,
task: Optional[Union[str, Task]] = None,
task: str | Task | None = None,
n_jobs=None,
# gpu_per_trial=0,
log_file_name=None,
@@ -1202,6 +1241,7 @@ class AutoML(BaseEstimator):
skip_transform=None,
mlflow_logging=None,
fit_kwargs_by_estimator=None,
mlflow_exp_name=None,
**fit_kwargs,
):
"""Find a model for a given task.
@@ -1295,14 +1335,15 @@ class AutoML(BaseEstimator):
'all' logs all the tried configs.
model_history: A boolean of whether to keep the trained best
model per estimator. Make sure memory is large enough if setting to True.
Default value is False: best_model_for_estimator would return a
Default value is False. If False, best_model_for_estimator would return a
untrained model for non-best learner.
log_training_metric: A boolean of whether to log the training
metric for each model.
mem_thres: A float of the memory size constraint in bytes.
pred_time_limit: A float of the prediction latency constraint in seconds.
It refers to the average prediction time per row in validation data.
train_time_limit: None or a float of the training time constraint in seconds.
train_time_limit: None or a float of the training time constraint in seconds for each trial.
Only valid for sequential search.
X_val: None or a numpy array or a pandas dataframe of validation data.
y_val: None or a numpy array or a pandas series of validation labels.
sample_weight_val: None or a numpy array of the sample weight of
@@ -1315,6 +1356,12 @@ class AutoML(BaseEstimator):
for training data.
verbose: int, default=3 | Controls the verbosity, higher means more
messages.
verbose=0: logger level = CRITICAL
verbose=1: logger level = ERROR
verbose=2: logger level = WARNING
verbose=3: logger level = INFO
verbose=4: logger level = DEBUG
verbose>5: logger level = NOTSET
retrain_full: bool or str, default=True | whether to retrain the
selected model on the full training data when using holdout.
True - retrain only after search finishes; False - no retraining;
@@ -1328,7 +1375,7 @@ class AutoML(BaseEstimator):
* Valid str options depend on different tasks.
For classification tasks, valid choices are
["auto", 'stratified', 'uniform', 'time', 'group']. "auto" -> stratified.
For regression tasks, valid choices are ["auto", 'uniform', 'time'].
For regression tasks, valid choices are ["auto", 'uniform', 'time', 'group'].
"auto" -> uniform.
For time series forecast tasks, must be "auto" or 'time'.
For ranking task, must be "auto" or 'group'.
@@ -1347,9 +1394,9 @@ class AutoML(BaseEstimator):
- if "data:path" use data-dependent defaults which are stored at path;
- if "static", use data-independent defaults.
If dict, keys are the name of the estimators, and values are the starting
hyperparamter configurations for the corresponding estimators.
The value can be a single hyperparamter configuration dict or a list
of hyperparamter configuration dicts.
hyperparameter configurations for the corresponding estimators.
The value can be a single hyperparameter configuration dict or a list
of hyperparameter configuration dicts.
In the following code example, we get starting_points from the
`automl` object and use them in the `new_automl` object.
e.g.,
@@ -1381,6 +1428,9 @@ class AutoML(BaseEstimator):
early_stop: boolean, default=False | Whether to stop early if the
search is considered to converge.
force_cancel: boolean, default=False | Whether to forcely cancel the PySpark job if overtime.
mlflow_exp_name: str, default=None | The name of the mlflow experiment. This should be specified if
enable mlflow autologging on Spark. Otherwise it will log all the results into the experiment of the
same name as the basename of main entry file.
append_log: boolean, default=False | Whetehr to directly append the log
records to the input log file if it exists.
auto_augment: boolean, default=True | Whether to automatically
@@ -1466,9 +1516,7 @@ class AutoML(BaseEstimator):
skip_transform: boolean, default=False | Whether to pre-process data prior to modeling.
mlflow_logging: boolean, default=None | Whether to log the training results to mlflow.
Default value is None, which means the logging decision is made based on
AutoML.__init__'s mlflow_logging argument.
This requires mlflow to be installed and to have an active mlflow run.
FLAML will create nested runs.
AutoML.__init__'s mlflow_logging argument. Not valid if mlflow is not installed.
fit_kwargs_by_estimator: dict, default=None | The user specified keywords arguments, grouped by estimator name.
For TransformersEstimator, available fit_kwargs can be found from
[TrainingArgumentsForAuto](nlp/huggingface/training_args).
@@ -1518,7 +1566,7 @@ class AutoML(BaseEstimator):
max_epochs: int, default = 20 | Maximum number of epochs to run training,
only used by TemporalFusionTransformerEstimator.
batch_size: int, default = 64 | Batch size for training model, only
used by TemporalFusionTransformerEstimator.
used by TemporalFusionTransformerEstimator and TCNEstimator.
"""
self._state._start_time_flag = self._start_time_flag = time.time()
@@ -1569,6 +1617,7 @@ class AutoML(BaseEstimator):
)
early_stop = self._settings.get("early_stop") if early_stop is None else early_stop
force_cancel = self._settings.get("force_cancel") if force_cancel is None else force_cancel
mlflow_exp_name = self._settings.get("mlflow_exp_name") if mlflow_exp_name is None else mlflow_exp_name
# no search budget is provided?
no_budget = time_budget < 0 and max_iter is None and not early_stop
append_log = self._settings.get("append_log") if append_log is None else append_log
@@ -1591,6 +1640,13 @@ class AutoML(BaseEstimator):
_ch.setFormatter(logger_formatter)
logger.addHandler(_ch)
if model_history:
logger.warning(
"With `model_history` set to `True` by default, all intermediate models are retained in memory, "
"which may significantly increase memory usage and slow down training. "
"Consider setting `model_history=False` to optimize memory and accelerate the training process."
)
if not use_ray and not use_spark and n_concurrent_trials > 1:
if ray_available:
logger.warning(
@@ -1621,7 +1677,6 @@ class AutoML(BaseEstimator):
self._use_ray = use_ray
# use the following condition if we have an estimation of average_trial_time and average_trial_overhead
# self._use_ray = use_ray or n_concurrent_trials > ( average_trial_time + average_trial_overhead) / (average_trial_time)
if self._use_ray is not False:
import ray
@@ -1655,11 +1710,29 @@ class AutoML(BaseEstimator):
self._state.fit_kwargs = fit_kwargs
custom_hp = custom_hp or self._settings.get("custom_hp")
self._skip_transform = self._settings.get("skip_transform") if skip_transform is None else skip_transform
self._mlflow_logging = self._settings.get("mlflow_logging") if mlflow_logging is None else mlflow_logging
self._mlflow_logging = (
False
if mlflow is None
else self._settings.get("mlflow_logging")
if mlflow_logging is None
else mlflow_logging
)
fit_kwargs_by_estimator = fit_kwargs_by_estimator or self._settings.get("fit_kwargs_by_estimator")
self._state.fit_kwargs_by_estimator = fit_kwargs_by_estimator.copy() # shallow copy of fit_kwargs_by_estimator
self._state.weight_val = sample_weight_val
self._mlflow_exp_name = mlflow_exp_name
self.mlflow_integration = None
self.autolog_extra_tag = {
"extra_tag.sid": f"flaml_{flaml_version}_{int(time.time())}_{random.randint(1001, 9999)}"
}
if internal_mlflow and self._mlflow_logging and (mlflow.active_run() or is_autolog_enabled()):
try:
self.mlflow_integration = MLflowIntegration("automl", mlflow_exp_name, extra_tag=self.autolog_extra_tag)
self._mlflow_exp_name = self.mlflow_integration.experiment_name
if not (mlflow.active_run() is not None or is_autolog_enabled()):
self.mlflow_integration.only_history = True
except KeyError:
logger.info("Not in Fabric, Skipped")
task.validate_data(
self,
self._state,
@@ -1687,7 +1760,7 @@ class AutoML(BaseEstimator):
logger.info(f"Data split method: {self._split_type}")
eval_method = self._decide_eval_method(eval_method, time_budget)
self._state.eval_method = eval_method
logger.info("Evaluation method: {}".format(eval_method))
logger.info(f"Evaluation method: {eval_method}")
self._state.cv_score_agg_func = cv_score_agg_func or self._settings.get("cv_score_agg_func")
self._retrain_in_budget = retrain_full == "budget" and (eval_method == "holdout" and self._state.X_val is None)
@@ -1704,13 +1777,9 @@ class AutoML(BaseEstimator):
if sample_size:
_sample_size_from_starting_points[_estimator] = sample_size
elif _point_per_estimator and isinstance(_point_per_estimator, list):
_sample_size_set = set(
[
config["FLAML_sample_size"]
for config in _point_per_estimator
if "FLAML_sample_size" in config
]
)
_sample_size_set = {
config["FLAML_sample_size"] for config in _point_per_estimator if "FLAML_sample_size" in config
}
if _sample_size_set:
_sample_size_from_starting_points[_estimator] = min(_sample_size_set)
if len(_sample_size_set) > 1:
@@ -1728,6 +1797,11 @@ class AutoML(BaseEstimator):
self._min_sample_size_input = min_sample_size
self._prepare_data(eval_method, split_ratio, n_splits)
# infer the signature of the input/output data
if self.mlflow_integration is not None:
self.estimator_signature = infer_signature(self._state.X_train, self._state.y_train)
self.pipeline_signature = infer_signature(X_train, y_train, dataframe, label)
# TODO pull this to task as decide_sample_size
if isinstance(self._min_sample_size, dict):
self._sample = {
@@ -1826,6 +1900,11 @@ class AutoML(BaseEstimator):
and (max_iter > 0 or retrain_full is True)
or max_iter == 1
)
if self.mlflow_integration is not None and all(
[self.mlflow_integration.parent_run_id is None, not self.mlflow_integration.only_history]
):
# force not retrain if no active run
self._state.retrain_final = False
# add custom learner
for estimator_name in estimator_list:
if estimator_name not in self._state.learner_classes:
@@ -1897,7 +1976,7 @@ class AutoML(BaseEstimator):
max_iter=max_iter / len(estimator_list) if self._learner_selector == "roundrobin" else max_iter,
budget=self._state.time_budget,
)
logger.info("List of ML learners in AutoML Run: {}".format(estimator_list))
logger.info(f"List of ML learners in AutoML Run: {estimator_list}")
self.estimator_list = estimator_list
self._active_estimators = estimator_list.copy()
self._ensemble = ensemble
@@ -1939,7 +2018,7 @@ class AutoML(BaseEstimator):
)
):
logger.warning(
"Time taken to find the best model is {0:.0f}% of the "
"Time taken to find the best model is {:.0f}% of the "
"provided time budget and not all estimators' hyperparameter "
"search converged. Consider increasing the time budget.".format(
self._time_taken_best_iter / self._state.time_budget * 100
@@ -1958,6 +2037,8 @@ class AutoML(BaseEstimator):
) # NOTE: this is after kwargs is updated to fit_kwargs_by_estimator
del self._state.groups, self._state.groups_all, self._state.groups_val
logger.setLevel(old_level)
if self.mlflow_integration is not None:
self.mlflow_integration.resume_mlflow()
def _search_parallel(self):
if self._use_ray is not False:
@@ -2054,6 +2135,14 @@ class AutoML(BaseEstimator):
if self._use_spark:
# use spark as parallel backend
mlflow_log_latency = (
get_mlflow_log_latency(model_history=self._state.model_history) if self.mlflow_integration else 0
)
(
logger.info(f"Estimated mlflow_log_latency: {mlflow_log_latency} seconds.")
if mlflow_log_latency > 0
else None
)
analysis = tune.run(
self.trainable,
search_alg=search_alg,
@@ -2066,6 +2155,9 @@ class AutoML(BaseEstimator):
use_ray=False,
use_spark=True,
force_cancel=self._force_cancel,
mlflow_exp_name=self._mlflow_exp_name,
automl_info=(mlflow_log_latency,), # pass automl info to tune.run
extra_tag=self.autolog_extra_tag,
# raise_on_failed_trial=False,
# keep_checkpoints_num=1,
# checkpoint_score_attr="min-val_loss",
@@ -2126,6 +2218,8 @@ class AutoML(BaseEstimator):
self._search_states[estimator].best_config = config
if better or self._log_type == "all":
self._log_trial(search_state, estimator)
if self.mlflow_integration:
self.mlflow_integration.record_state(self, search_state, estimator)
def _log_trial(self, search_state, estimator):
if self._training_log:
@@ -2139,36 +2233,6 @@ class AutoML(BaseEstimator):
estimator,
search_state.sample_size,
)
if self._mlflow_logging and mlflow is not None and mlflow.active_run():
with mlflow.start_run(nested=True):
mlflow.log_metric("iter_counter", self._track_iter)
if (search_state.metric_for_logging is not None) and (
"intermediate_results" in search_state.metric_for_logging
):
for each_entry in search_state.metric_for_logging["intermediate_results"]:
with mlflow.start_run(nested=True):
mlflow.log_metrics(each_entry)
mlflow.log_metric("iter_counter", self._iter_per_learner[estimator])
del search_state.metric_for_logging["intermediate_results"]
if search_state.metric_for_logging:
mlflow.log_metrics(search_state.metric_for_logging)
mlflow.log_metric("trial_time", search_state.trial_time)
mlflow.log_metric("wall_clock_time", self._state.time_from_start)
mlflow.log_metric("validation_loss", search_state.val_loss)
mlflow.log_params(search_state.config)
mlflow.log_param("learner", estimator)
mlflow.log_param("sample_size", search_state.sample_size)
mlflow.log_metric("best_validation_loss", search_state.best_loss)
mlflow.log_param("best_config", search_state.best_config)
mlflow.log_param("best_learner", self._best_estimator)
mlflow.log_metric(
self._state.metric if isinstance(self._state.metric, str) else self._state.error_metric,
1 - search_state.val_loss
if self._state.error_metric.startswith("1-")
else -search_state.val_loss
if self._state.error_metric.startswith("-")
else search_state.val_loss,
)
def _search_sequential(self):
try:
@@ -2322,10 +2386,19 @@ class AutoML(BaseEstimator):
verbose=max(self.verbose - 3, 0),
use_ray=False,
use_spark=False,
force_cancel=self._force_cancel,
mlflow_exp_name=self._mlflow_exp_name,
automl_info=(0,), # pass automl info to tune.run
extra_tag=self.autolog_extra_tag,
)
time_used = time.time() - start_run_time
better = False
if analysis.trials:
(
logger.debug(f"result in automl: {analysis.trials}, {analysis.trials[-1].last_result}")
if analysis.trials
else logger.debug("result in automl: [], None")
)
if analysis.trials and analysis.trials[-1].last_result:
result = analysis.trials[-1].last_result
search_state.update(result, time_used=time_used)
if self._estimator_index is None:
@@ -2387,6 +2460,8 @@ class AutoML(BaseEstimator):
search_state.trained_estimator.cleanup()
if better or self._log_type == "all":
self._log_trial(search_state, estimator)
if self.mlflow_integration:
self.mlflow_integration.record_state(self, search_state, estimator)
logger.info(
" at {:.1f}s,\testimator {}'s best error={:.4f},\tbest estimator {}'s best error={:.4f}".format(
@@ -2439,7 +2514,7 @@ class AutoML(BaseEstimator):
state.best_config,
self.data_size_full,
)
logger.info("retrain {} for {:.1f}s".format(self._best_estimator, retrain_time))
logger.info(f"retrain {self._best_estimator} for {retrain_time:.1f}s")
self._retrained_config[best_config_sig] = state.best_config_train_time = retrain_time
est_retrain_time = 0
self._state.time_from_start = time.time() - self._start_time_flag
@@ -2461,8 +2536,8 @@ class AutoML(BaseEstimator):
self._time_taken_best_iter = 0
self._config_history = {}
self._max_iter_per_learner = 10000
self._iter_per_learner = dict([(e, 0) for e in self.estimator_list])
self._iter_per_learner_fullsize = dict([(e, 0) for e in self.estimator_list])
self._iter_per_learner = {e: 0 for e in self.estimator_list}
self._iter_per_learner_fullsize = {e: 0 for e in self.estimator_list}
self._fullsize_reached = False
self._trained_estimator = None
self._best_estimator = None
@@ -2478,6 +2553,21 @@ class AutoML(BaseEstimator):
self._selected = state = self._search_states[estimator]
state.best_config_sample_size = self._state.data_size[0]
state.best_config = state.init_config[0] if state.init_config else {}
self._track_iter = 0
self._config_history[self._track_iter] = (estimator, state.best_config, self._state.time_from_start)
self._best_iteration = self._track_iter
state.val_loss = getattr(state, "val_loss", float("inf"))
state.best_loss = getattr(state, "best_loss", float("inf"))
state.config = getattr(state, "config", state.best_config.copy())
state.metric_for_logging = getattr(state, "metric_for_logging", None)
state.sample_size = getattr(state, "sample_size", self._state.data_size[0])
state.learner_class = getattr(state, "learner_class", self._state.learner_classes.get(estimator))
if hasattr(self, "mlflow_integration") and self.mlflow_integration:
self.mlflow_integration.record_state(
automl=self,
search_state=state,
estimator=estimator,
)
elif self._use_ray is False and self._use_spark is False:
self._search_sequential()
else:
@@ -2487,6 +2577,12 @@ class AutoML(BaseEstimator):
self._training_log.checkpoint()
self._state.time_from_start = time.time() - self._start_time_flag
if self._best_estimator:
if self.mlflow_integration:
self.mlflow_integration.log_automl(self)
if mlflow.active_run() is None:
if self.mlflow_integration.parent_run_id is not None and self.mlflow_integration.autolog:
# ensure result of retrain autolog to parent run
mlflow.start_run(run_id=self.mlflow_integration.parent_run_id)
self._selected = self._search_states[self._best_estimator]
self.modelcount = sum(search_state.total_iter for search_state in self._search_states.values())
if self._trained_estimator:
@@ -2623,13 +2719,67 @@ class AutoML(BaseEstimator):
self._best_estimator,
state.best_config,
self.data_size_full,
is_retrain=True,
)
logger.info("retrain {} for {:.1f}s".format(self._best_estimator, retrain_time))
logger.info(f"retrain {self._best_estimator} for {retrain_time:.1f}s")
state.best_config_train_time = retrain_time
if self._trained_estimator:
logger.info(f"retrained model: {self._trained_estimator.model}")
if self.best_run_id is not None:
logger.info(f"Best MLflow run name: {self.best_run_name}")
logger.info(f"Best MLflow run id: {self.best_run_id}")
if self.mlflow_integration is not None:
# try log retrained model
if all(
[
self.mlflow_integration.manual_log,
not self.mlflow_integration.has_model,
self.mlflow_integration.parent_run_id is not None,
]
):
if mlflow.active_run() is None:
mlflow.start_run(run_id=self.mlflow_integration.parent_run_id)
if self.best_estimator.endswith("_spark"):
self.mlflow_integration.log_model(
self._trained_estimator.model,
self.best_estimator,
signature=self.estimator_signature,
run_id=self.mlflow_integration.parent_run_id,
)
else:
self.mlflow_integration.pickle_and_log_automl_artifacts(
self,
self.model,
self.best_estimator,
signature=self.pipeline_signature,
run_id=self.mlflow_integration.parent_run_id,
)
else:
logger.info("not retraining because the time budget is too small.")
logger.warning("not retraining because the time budget is too small.")
self.wait_futures()
def wait_futures(self):
if self.mlflow_integration is not None:
logger.debug("Collecting results from submitted record_state tasks")
t1 = time.perf_counter()
for future in as_completed(self.mlflow_integration.futures):
_task = self.mlflow_integration.futures[future]
try:
result = future.result()
logger.debug(f"Result for record_state task {_task}: {result}")
except Exception as e:
logger.warning(f"Exception for record_state task {_task}: {e}")
for future in as_completed(self.mlflow_integration.futures_log_model):
_task = self.mlflow_integration.futures_log_model[future]
try:
result = future.result()
logger.debug(f"Result for log_model task {_task}: {result}")
except Exception as e:
logger.warning(f"Exception for log_model task {_task}: {e}")
t2 = time.perf_counter()
logger.debug(f"Collecting results from tasks submitted to executors costs {t2-t1} seconds.")
else:
logger.debug("No futures to wait for.")
def __del__(self):
if (
@@ -2647,7 +2797,7 @@ class AutoML(BaseEstimator):
if self._estimator_index == len(estimator_list):
self._estimator_index = 0
return estimator_list[self._estimator_index]
min_estimated_cost, selected = np.Inf, None
min_estimated_cost, selected = np.inf, None
inv = []
untried_exists = False
for i, estimator in enumerate(estimator_list):
@@ -2701,3 +2851,7 @@ class AutoML(BaseEstimator):
q += inv[i] / s
if p < q:
return estimator_list[i]
@property
def automl_pipeline(self):
return None

View File

@@ -0,0 +1 @@
from .histgb import HistGradientBoostingEstimator

View File

@@ -0,0 +1,75 @@
try:
from sklearn.ensemble import HistGradientBoostingClassifier, HistGradientBoostingRegressor
except ImportError as e:
print(f"scikit-learn is required for HistGradientBoostingEstimator. Please install it; error: {e}")
from flaml import tune
from flaml.automl.model import SKLearnEstimator
from flaml.automl.task import Task
class HistGradientBoostingEstimator(SKLearnEstimator):
"""The class for tuning Histogram Gradient Boosting."""
ITER_HP = "max_iter"
HAS_CALLBACK = False
DEFAULT_ITER = 100
@classmethod
def search_space(cls, data_size: int, task, **params) -> dict:
upper = max(5, min(32768, int(data_size[0]))) # upper must be larger than lower
return {
"n_estimators": {
"domain": tune.lograndint(lower=4, upper=upper),
"init_value": 4,
"low_cost_init_value": 4,
},
"max_leaves": {
"domain": tune.lograndint(lower=4, upper=upper),
"init_value": 4,
"low_cost_init_value": 4,
},
"min_samples_leaf": {
"domain": tune.lograndint(lower=2, upper=2**7 + 1),
"init_value": 20,
},
"learning_rate": {
"domain": tune.loguniform(lower=1 / 1024, upper=1.0),
"init_value": 0.1,
},
"log_max_bin": { # log transformed with base 2, <= 256
"domain": tune.lograndint(lower=3, upper=9),
"init_value": 8,
},
"l2_regularization": {
"domain": tune.loguniform(lower=1 / 1024, upper=1024),
"init_value": 1.0,
},
}
def config2params(self, config: dict) -> dict:
params = super().config2params(config)
if "log_max_bin" in params:
params["max_bins"] = (1 << params.pop("log_max_bin")) - 1
if "max_leaves" in params:
params["max_leaf_nodes"] = params.get("max_leaf_nodes", params.pop("max_leaves"))
if "n_estimators" in params:
params["max_iter"] = params.get("max_iter", params.pop("n_estimators"))
if "random_state" not in params:
params["random_state"] = 24092023
if "n_jobs" in params:
params.pop("n_jobs")
return params
def __init__(
self,
task: Task,
**config,
):
super().__init__(task, **config)
self.params["verbose"] = 0
if self._task.is_classification():
self.estimator_class = HistGradientBoostingClassifier
else:
self.estimator_class = HistGradientBoostingRegressor

View File

@@ -2,21 +2,28 @@
# * Copyright (c) Microsoft Corporation. All rights reserved.
# * Licensed under the MIT License. See LICENSE file in the
# * project root for license information.
import numpy as np
from datetime import datetime
from typing import TYPE_CHECKING, Union
import json
import os
import random
import uuid
from datetime import datetime, timedelta
from decimal import ROUND_HALF_UP, Decimal
from typing import TYPE_CHECKING, Union
import numpy as np
from flaml.automl.spark import DataFrame, F, Series, T, pd, ps, psDataFrame, psSeries
from flaml.automl.training_log import training_log_reader
from flaml.automl.spark import ps, psDataFrame, psSeries, DataFrame, Series, pd
try:
from scipy.sparse import vstack, issparse
from scipy.sparse import issparse, vstack
except ImportError:
pass
if TYPE_CHECKING:
from flaml.automl.task import Task
TS_TIMESTAMP_COL = "ds"
TS_VALUE_COL = "y"
@@ -41,8 +48,9 @@ def load_openml_dataset(dataset_id, data_dir=None, random_state=0, dataset_forma
y_train: A series or array of labels for training data.
y_test: A series or array of labels for test data.
"""
import openml
import pickle
import openml
from sklearn.model_selection import train_test_split
filename = "openml_ds" + str(dataset_id) + ".pkl"
@@ -93,9 +101,10 @@ def load_openml_task(task_id, data_dir):
y_train: A series of labels for training data.
y_test: A series of labels for test data.
"""
import openml
import pickle
import openml
task = openml.tasks.get_task(task_id)
filename = "openml_task" + str(task_id) + ".pkl"
filepath = os.path.join(data_dir, filename)
@@ -289,7 +298,7 @@ class DataTransformer:
y = y.rename(TS_VALUE_COL)
for column in X.columns:
# sklearn\utils\validation.py needs int/float values
if X[column].dtype.name in ("object", "category"):
if X[column].dtype.name in ("object", "category", "string"):
if X[column].nunique() == 1 or X[column].nunique(dropna=True) == n - X[column].isnull().sum():
X.drop(columns=column, inplace=True)
drop = True
@@ -341,8 +350,8 @@ class DataTransformer:
drop = True
else:
drop = False
from sklearn.impute import SimpleImputer
from sklearn.compose import ColumnTransformer
from sklearn.impute import SimpleImputer
self.transformer = ColumnTransformer(
[
@@ -441,3 +450,331 @@ class DataTransformer:
def group_counts(groups):
_, i, c = np.unique(groups, return_counts=True, return_index=True)
return c[np.argsort(i)]
def get_random_dataframe(n_rows: int = 200, ratio_none: float = 0.1, seed: int = 42) -> DataFrame:
"""Generate a random pandas DataFrame with various data types for testing.
This function creates a DataFrame with multiple column types including:
- Timestamps
- Integers
- Floats
- Categorical values
- Booleans
- Lists (tags)
- Decimal strings
- UUIDs
- Binary data (as hex strings)
- JSON blobs
- Nullable text fields
Parameters
----------
n_rows : int, default=200
Number of rows in the generated DataFrame
ratio_none : float, default=0.1
Probability of generating None values in applicable columns
seed : int, default=42
Random seed for reproducibility
Returns
-------
pd.DataFrame
A DataFrame with 14 columns of various data types
Examples
--------
>>> df = get_random_dataframe(100, 0.05, 123)
>>> df.shape
(100, 14)
>>> df.dtypes
timestamp datetime64[ns]
id int64
score float64
status object
flag object
count object
value object
tags object
rating object
uuid object
binary object
json_blob object
category category
nullable_text object
dtype: object
"""
np.random.seed(seed)
random.seed(seed)
def random_tags():
tags = ["AI", "ML", "data", "robotics", "vision"]
return random.sample(tags, k=random.randint(1, 3)) if random.random() > ratio_none else None
def random_decimal():
return (
str(Decimal(random.uniform(1, 5)).quantize(Decimal("0.01"), rounding=ROUND_HALF_UP))
if random.random() > ratio_none
else None
)
def random_json_blob():
blob = {"a": random.randint(1, 10), "b": random.random()}
return json.dumps(blob) if random.random() > ratio_none else None
def random_binary():
return bytes(random.randint(0, 255) for _ in range(4)).hex() if random.random() > ratio_none else None
data = {
"timestamp": [
datetime(2020, 1, 1) + timedelta(days=np.random.randint(0, 1000)) if np.random.rand() > ratio_none else None
for _ in range(n_rows)
],
"id": range(1, n_rows + 1),
"score": np.random.uniform(0, 100, n_rows),
"status": np.random.choice(
["active", "inactive", "pending", None],
size=n_rows,
p=[(1 - ratio_none) / 3, (1 - ratio_none) / 3, (1 - ratio_none) / 3, ratio_none],
),
"flag": np.random.choice(
[True, False, None], size=n_rows, p=[(1 - ratio_none) / 2, (1 - ratio_none) / 2, ratio_none]
),
"count": [np.random.randint(0, 100) if np.random.rand() > ratio_none else None for _ in range(n_rows)],
"value": [round(np.random.normal(50, 15), 2) if np.random.rand() > ratio_none else None for _ in range(n_rows)],
"tags": [random_tags() for _ in range(n_rows)],
"rating": [random_decimal() for _ in range(n_rows)],
"uuid": [str(uuid.uuid4()) if np.random.rand() > ratio_none else None for _ in range(n_rows)],
"binary": [random_binary() for _ in range(n_rows)],
"json_blob": [random_json_blob() for _ in range(n_rows)],
"category": pd.Categorical(
np.random.choice(
["A", "B", "C", None],
size=n_rows,
p=[(1 - ratio_none) / 3, (1 - ratio_none) / 3, (1 - ratio_none) / 3, ratio_none],
)
),
"nullable_text": [random.choice(["Good", "Bad", "Average", None]) for _ in range(n_rows)],
}
return pd.DataFrame(data)
def auto_convert_dtypes_spark(
df: psDataFrame,
na_values: list = None,
category_threshold: float = 0.3,
convert_threshold: float = 0.6,
sample_ratio: float = 0.1,
) -> tuple[psDataFrame, dict]:
"""Automatically convert data types in a PySpark DataFrame using heuristics.
This function analyzes a sample of the DataFrame to infer appropriate data types
and applies the conversions. It handles timestamps, numeric values, booleans,
and categorical fields.
Args:
df: A PySpark DataFrame to convert.
na_values: List of strings to be considered as NA/NaN. Defaults to
['NA', 'na', 'NULL', 'null', ''].
category_threshold: Maximum ratio of unique values to total values
to consider a column categorical. Defaults to 0.3.
convert_threshold: Minimum ratio of successfully converted values required
to apply a type conversion. Defaults to 0.6.
sample_ratio: Fraction of data to sample for type inference. Defaults to 0.1.
Returns:
tuple: (The DataFrame with converted types, A dictionary mapping column names to
their inferred types as strings)
Note:
- 'category' in the schema dict is conceptual as PySpark doesn't have a true
category type like pandas
- The function uses sampling for efficiency with large datasets
"""
n_rows = df.count()
if na_values is None:
na_values = ["NA", "na", "NULL", "null", ""]
# Normalize NA-like values
for colname, coltype in df.dtypes:
if coltype == "string":
df = df.withColumn(
colname,
F.when(F.trim(F.lower(F.col(colname))).isin([v.lower() for v in na_values]), None).otherwise(
F.col(colname)
),
)
schema = {}
for colname in df.columns:
# Sample once at an appropriate ratio
sample_ratio_to_use = min(1.0, sample_ratio if n_rows * sample_ratio > 100 else 100 / n_rows)
col_sample = df.select(colname).sample(withReplacement=False, fraction=sample_ratio_to_use).dropna()
sample_count = col_sample.count()
inferred_type = "string" # Default
if col_sample.dtypes[0][1] != "string":
schema[colname] = col_sample.dtypes[0][1]
continue
if sample_count == 0:
schema[colname] = "string"
continue
# Check if timestamp
ts_col = col_sample.withColumn("parsed", F.to_timestamp(F.col(colname)))
# Check numeric
if (
col_sample.withColumn("n", F.col(colname).cast("double")).filter("n is not null").count()
>= sample_count * convert_threshold
):
# All whole numbers?
all_whole = (
col_sample.withColumn("n", F.col(colname).cast("double"))
.filter("n is not null")
.withColumn("frac", F.abs(F.col("n") % 1))
.filter("frac > 0.000001")
.count()
== 0
)
inferred_type = "int" if all_whole else "double"
# Check low-cardinality (category-like)
elif (
sample_count > 0
and col_sample.select(F.countDistinct(F.col(colname))).collect()[0][0] / sample_count <= category_threshold
):
inferred_type = "category" # Will just be string, but marked as such
# Check if timestamp
elif ts_col.filter(F.col("parsed").isNotNull()).count() >= sample_count * convert_threshold:
inferred_type = "timestamp"
schema[colname] = inferred_type
# Apply inferred schema
for colname, inferred_type in schema.items():
if inferred_type == "int":
df = df.withColumn(colname, F.col(colname).cast(T.IntegerType()))
elif inferred_type == "double":
df = df.withColumn(colname, F.col(colname).cast(T.DoubleType()))
elif inferred_type == "boolean":
df = df.withColumn(
colname,
F.when(F.lower(F.col(colname)).isin("true", "yes", "1"), True)
.when(F.lower(F.col(colname)).isin("false", "no", "0"), False)
.otherwise(None),
)
elif inferred_type == "timestamp":
df = df.withColumn(colname, F.to_timestamp(F.col(colname)))
elif inferred_type == "category":
df = df.withColumn(colname, F.col(colname).cast(T.StringType())) # Marked conceptually
# otherwise keep as string (or original type)
return df, schema
def auto_convert_dtypes_pandas(
df: DataFrame,
na_values: list = None,
category_threshold: float = 0.3,
convert_threshold: float = 0.6,
sample_ratio: float = 1.0,
) -> tuple[DataFrame, dict]:
"""Automatically convert data types in a pandas DataFrame using heuristics.
This function analyzes the DataFrame to infer appropriate data types
and applies the conversions. It handles timestamps, timedeltas, numeric values,
and categorical fields.
Args:
df: A pandas DataFrame to convert.
na_values: List of strings to be considered as NA/NaN. Defaults to
['NA', 'na', 'NULL', 'null', ''].
category_threshold: Maximum ratio of unique values to total values
to consider a column categorical. Defaults to 0.3.
convert_threshold: Minimum ratio of successfully converted values required
to apply a type conversion. Defaults to 0.6.
sample_ratio: Fraction of data to sample for type inference. Not used in pandas version
but included for API compatibility. Defaults to 1.0.
Returns:
tuple: (The DataFrame with converted types, A dictionary mapping column names to
their inferred types as strings)
"""
if na_values is None:
na_values = {"NA", "na", "NULL", "null", ""}
df_converted = df.convert_dtypes()
schema = {}
# Sample if needed (for API compatibility)
if sample_ratio < 1.0:
df = df.sample(frac=sample_ratio)
n_rows = len(df)
for col in df.columns:
series = df[col]
# Replace NA-like values if string
series_cleaned = series.map(lambda x: np.nan if isinstance(x, str) and x.strip() in na_values else x)
# Skip conversion if already non-object data type, except bool which can potentially be categorical
if (
not isinstance(series_cleaned.dtype, pd.BooleanDtype)
and not isinstance(series_cleaned.dtype, pd.StringDtype)
and series_cleaned.dtype != "object"
):
# Keep the original data type for non-object dtypes
df_converted[col] = series
schema[col] = str(series_cleaned.dtype)
continue
# print(f"type: {series_cleaned.dtype}, column: {series_cleaned.name}")
if not isinstance(series_cleaned.dtype, pd.BooleanDtype):
# Try numeric (int or float)
numeric = pd.to_numeric(series_cleaned, errors="coerce")
if numeric.notna().sum() >= n_rows * convert_threshold:
if (numeric.dropna() % 1 == 0).all():
try:
df_converted[col] = numeric.astype("int") # Nullable integer
schema[col] = "int"
continue
except Exception:
pass
df_converted[col] = numeric.astype("double")
schema[col] = "double"
continue
# Try datetime
datetime_converted = pd.to_datetime(series_cleaned, errors="coerce")
if datetime_converted.notna().sum() >= n_rows * convert_threshold:
df_converted[col] = datetime_converted
schema[col] = "timestamp"
continue
# Try timedelta
try:
timedelta_converted = pd.to_timedelta(series_cleaned, errors="coerce")
if timedelta_converted.notna().sum() >= n_rows * convert_threshold:
df_converted[col] = timedelta_converted
schema[col] = "timedelta"
continue
except TypeError:
pass
# Try category
try:
unique_ratio = series_cleaned.nunique(dropna=True) / n_rows if n_rows > 0 else 1.0
if unique_ratio <= category_threshold:
df_converted[col] = series_cleaned.astype("category")
schema[col] = "category"
continue
except Exception:
pass
df_converted[col] = series_cleaned.astype("string")
schema[col] = "string"
return df_converted, schema

View File

@@ -1,7 +1,37 @@
import logging
import os
class ColoredFormatter(logging.Formatter):
# ANSI escape codes for colors
COLORS = {
# logging.DEBUG: "\033[36m", # Cyan
# logging.INFO: "\033[32m", # Green
logging.WARNING: "\033[33m", # Yellow
logging.ERROR: "\033[31m", # Red
logging.CRITICAL: "\033[1;31m", # Bright Red
}
RESET = "\033[0m" # Reset to default
def __init__(self, fmt, datefmt, use_color=True):
super().__init__(fmt, datefmt)
self.use_color = use_color
def format(self, record):
formatted = super().format(record)
if self.use_color:
color = self.COLORS.get(record.levelno, "")
if color:
return f"{color}{formatted}{self.RESET}"
return formatted
logger = logging.getLogger(__name__)
logger_formatter = logging.Formatter(
"[%(name)s: %(asctime)s] {%(lineno)d} %(levelname)s - %(message)s", "%m-%d %H:%M:%S"
use_color = True
if os.getenv("FLAML_LOG_NO_COLOR"):
use_color = False
logger_formatter = ColoredFormatter(
"[%(name)s: %(asctime)s] {%(lineno)d} %(levelname)s - %(message)s", "%m-%d %H:%M:%S", use_color
)
logger.propagate = False

View File

@@ -2,30 +2,31 @@
# * Copyright (c) FLAML authors. All rights reserved.
# * Licensed under the MIT License. See LICENSE file in the
# * project root for license information.
import time
from typing import Union, Callable, TypeVar, Optional, Tuple
import logging
import time
from typing import Callable, Optional, Tuple, TypeVar, Union
import numpy as np
from flaml.automl.data import group_counts
from flaml.automl.task.task import Task
from flaml.automl.model import BaseEstimator, TransformersEstimator
from flaml.automl.spark import psDataFrame, psSeries, ERROR as SPARK_ERROR, Series, DataFrame
from flaml.automl.spark import ERROR as SPARK_ERROR
from flaml.automl.spark import DataFrame, Series, psDataFrame, psSeries
from flaml.automl.task.task import Task
from flaml.automl.time_series import TimeSeriesDataset
try:
from sklearn.metrics import (
mean_squared_error,
r2_score,
roc_auc_score,
accuracy_score,
mean_absolute_error,
log_loss,
average_precision_score,
f1_score,
log_loss,
mean_absolute_error,
mean_absolute_percentage_error,
mean_squared_error,
ndcg_score,
r2_score,
roc_auc_score,
)
except ImportError:
pass
@@ -33,7 +34,6 @@ except ImportError:
if SPARK_ERROR is None:
from flaml.automl.spark.metrics import spark_metric_loss_score
from flaml.automl.time_series import TimeSeriesDataset
logger = logging.getLogger(__name__)
@@ -89,6 +89,11 @@ huggingface_metric_to_mode = {
"wer": "min",
}
huggingface_submetric_to_metric = {"rouge1": "rouge", "rouge2": "rouge"}
spark_metric_name_dict = {
"Regression": ["r2", "rmse", "mse", "mae", "var"],
"Binary Classification": ["pr_auc", "roc_auc"],
"Multi-class Classification": ["accuracy", "log_loss", "f1", "micro_f1", "macro_f1"],
}
def metric_loss_score(
@@ -122,7 +127,7 @@ def metric_loss_score(
import datasets
datasets_metric_name = huggingface_submetric_to_metric.get(metric_name, metric_name.split(":")[0])
metric = datasets.load_metric(datasets_metric_name)
metric = datasets.load_metric(datasets_metric_name, trust_remote_code=True)
metric_mode = huggingface_metric_to_mode[datasets_metric_name]
if metric_name.startswith("seqeval"):
@@ -323,7 +328,7 @@ def compute_estimator(
estimator_name: str,
eval_method: str,
eval_metric: Union[str, Callable],
best_val_loss=np.Inf,
best_val_loss=np.inf,
n_jobs: Optional[int] = 1, # some estimators of EstimatorSubclass don't accept n_jobs. Should be None in that case.
estimator_class: Optional[EstimatorSubclass] = None,
cv_score_agg_func: Optional[callable] = None,
@@ -334,6 +339,14 @@ def compute_estimator(
if fit_kwargs is None:
fit_kwargs = {}
fe_params = {}
for param, value in config_dic.items():
if param.startswith("fe."):
fe_params[param] = value
for param, value in fe_params.items():
config_dic.pop(param)
estimator_class = estimator_class or task.estimator_class_from_str(estimator_name)
estimator = estimator_class(
**config_dic,
@@ -401,12 +414,21 @@ def train_estimator(
free_mem_ratio=0,
) -> Tuple[EstimatorSubclass, float]:
start_time = time.time()
fe_params = {}
for param, value in config_dic.items():
if param.startswith("fe."):
fe_params[param] = value
for param, value in fe_params.items():
config_dic.pop(param)
estimator_class = estimator_class or task.estimator_class_from_str(estimator_name)
estimator = estimator_class(
**config_dic,
task=task,
n_jobs=n_jobs,
)
if fit_kwargs is None:
fit_kwargs = {}
@@ -567,14 +589,19 @@ def _eval_estimator(
pred_time = (time.time() - pred_start) / num_val_rows
val_loss = metric_loss_score(
eval_metric,
y_processed_predict=val_pred_y,
y_processed_true=y_val,
labels=labels,
sample_weight=weight_val,
groups=groups_val,
)
try:
val_loss = metric_loss_score(
eval_metric,
y_processed_predict=val_pred_y,
y_processed_true=y_val,
labels=labels,
sample_weight=weight_val,
groups=groups_val,
)
except ValueError as e:
# `r2_score` and other metrics may raise a `ValueError` when a model returns `inf` or `nan` values. In this case, we set the val_loss to infinity.
val_loss = np.inf
logger.warning(f"ValueError {e} happened in `metric_loss_score`, set `val_loss` to `np.inf`")
metric_for_logging = {"pred_time": pred_time}
if log_training_metric:
train_pred_y = get_y_pred(estimator, X_train, eval_metric, task)

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@@ -4,16 +4,15 @@ This directory contains utility functions used by AutoNLP. Currently we support
Please refer to this [link](https://microsoft.github.io/FLAML/docs/Examples/AutoML-NLP) for examples.
# Troubleshooting fine-tuning HPO for pre-trained language models
The frequent updates of transformers may lead to fluctuations in the results of tuning. To help users quickly troubleshoot the result of AutoNLP when a tuning failure occurs (e.g., failing to reproduce previous results), we have provided the following jupyter notebook:
* [Troubleshooting HPO for fine-tuning pre-trained language models](https://github.com/microsoft/FLAML/blob/main/notebook/research/acl2021.ipynb)
- [Troubleshooting HPO for fine-tuning pre-trained language models](https://github.com/microsoft/FLAML/blob/main/notebook/research/acl2021.ipynb)
Our findings on troubleshooting fine-tuning the Electra and RoBERTa model for the GLUE dataset can be seen in the following paper published in ACL 2021:
* [An Empirical Study on Hyperparameter Optimization for Fine-Tuning Pre-trained Language Models](https://arxiv.org/abs/2106.09204). Xueqing Liu, Chi Wang. ACL-IJCNLP 2021.
- [An Empirical Study on Hyperparameter Optimization for Fine-Tuning Pre-trained Language Models](https://arxiv.org/abs/2106.09204). Xueqing Liu, Chi Wang. ACL-IJCNLP 2021.
```bibtex
@inproceedings{liu2021hpo,

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@@ -1,17 +1,18 @@
from dataclasses import dataclass
from transformers.data.data_collator import (
DataCollatorWithPadding,
DataCollatorForTokenClassification,
DataCollatorForSeq2Seq,
)
from collections import OrderedDict
from dataclasses import dataclass
from transformers.data.data_collator import (
DataCollatorForSeq2Seq,
DataCollatorForTokenClassification,
DataCollatorWithPadding,
)
from flaml.automl.task.task import (
TOKENCLASSIFICATION,
MULTICHOICECLASSIFICATION,
SUMMARIZATION,
SEQCLASSIFICATION,
SEQREGRESSION,
SUMMARIZATION,
TOKENCLASSIFICATION,
)
@@ -19,6 +20,7 @@ from flaml.automl.task.task import (
class DataCollatorForMultipleChoiceClassification(DataCollatorWithPadding):
def __call__(self, features):
from itertools import chain
import torch
label_name = "label" if "label" in features[0].keys() else "labels"
@@ -30,7 +32,7 @@ class DataCollatorForMultipleChoiceClassification(DataCollatorWithPadding):
[{k: v[i] for k, v in feature.items()} for i in range(num_choices)] for feature in features
]
flattened_features = list(chain(*flattened_features))
batch = super(DataCollatorForMultipleChoiceClassification, self).__call__(flattened_features)
batch = super().__call__(flattened_features)
# Un-flatten
batch = {k: v.view(batch_size, num_choices, -1) for k, v in batch.items()}
# Add back labels

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@@ -1,6 +1,7 @@
import argparse
from dataclasses import dataclass, field
from typing import Optional, List
from typing import List, Optional
from flaml.automl.task.task import NLG_TASKS
try:

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@@ -1,14 +1,16 @@
from itertools import chain
import numpy as np
from flaml.automl.task.task import (
SUMMARIZATION,
SEQREGRESSION,
SEQCLASSIFICATION,
MULTICHOICECLASSIFICATION,
TOKENCLASSIFICATION,
NLG_TASKS,
)
from flaml.automl.data import pd
from flaml.automl.task.task import (
MULTICHOICECLASSIFICATION,
NLG_TASKS,
SEQCLASSIFICATION,
SEQREGRESSION,
SUMMARIZATION,
TOKENCLASSIFICATION,
)
def todf(X, Y, column_name):
@@ -243,7 +245,7 @@ def tokenize_row(
return_column_name=False,
):
if prefix:
this_row = tuple(["".join(x) for x in zip(prefix, this_row)])
this_row = tuple("".join(x) for x in zip(prefix, this_row))
# tokenizer.pad_token = tokenizer.eos_token
tokenized_example = tokenizer(
@@ -377,6 +379,7 @@ def load_model(checkpoint_path, task, num_labels=None):
transformers.logging.set_verbosity_error()
from transformers import AutoConfig
from flaml.automl.task.task import (
SEQCLASSIFICATION,
SEQREGRESSION,
@@ -384,10 +387,12 @@ def load_model(checkpoint_path, task, num_labels=None):
)
def get_this_model(checkpoint_path, task, model_config):
from transformers import AutoModelForSequenceClassification
from transformers import AutoModelForSeq2SeqLM
from transformers import AutoModelForMultipleChoice
from transformers import AutoModelForTokenClassification
from transformers import (
AutoModelForMultipleChoice,
AutoModelForSeq2SeqLM,
AutoModelForSequenceClassification,
AutoModelForTokenClassification,
)
if task in (SEQCLASSIFICATION, SEQREGRESSION):
return AutoModelForSequenceClassification.from_pretrained(

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@@ -1,11 +1,12 @@
from typing import Dict, Any
from typing import Any, Dict
import numpy as np
from flaml.automl.task.task import (
SUMMARIZATION,
SEQREGRESSION,
SEQCLASSIFICATION,
MULTICHOICECLASSIFICATION,
SEQCLASSIFICATION,
SEQREGRESSION,
SUMMARIZATION,
TOKENCLASSIFICATION,
)
@@ -31,7 +32,7 @@ def is_a_list_of_str(this_obj):
def _clean_value(value: Any) -> str:
if isinstance(value, float):
return "{:.5}".format(value)
return f"{value:.5}"
else:
return str(value).replace("/", "_")
@@ -85,7 +86,7 @@ class Counter:
@staticmethod
def get_trial_fold_name(local_dir, trial_config, trial_id):
Counter.counter += 1
experiment_tag = "{0}_{1}".format(str(Counter.counter), format_vars(trial_config))
experiment_tag = f"{str(Counter.counter)}_{format_vars(trial_config)}"
logdir = get_logdir_name(_generate_dirname(experiment_tag, trial_id=trial_id), local_dir)
return logdir

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@@ -6,8 +6,10 @@ try:
import pyspark.pandas as ps
import pyspark.sql.functions as F
import pyspark.sql.types as T
from pyspark.pandas import DataFrame as psDataFrame
from pyspark.pandas import Series as psSeries
from pyspark.pandas import set_option
from pyspark.sql import DataFrame as sparkDataFrame
from pyspark.pandas import DataFrame as psDataFrame, Series as psSeries, set_option
from pyspark.util import VersionUtils
except ImportError:

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@@ -1,97 +0,0 @@
ParamList_LightGBM_Base = [
"baggingFraction",
"baggingFreq",
"baggingSeed",
"binSampleCount",
"boostFromAverage",
"boostingType",
"catSmooth",
"categoricalSlotIndexes",
"categoricalSlotNames",
"catl2",
"chunkSize",
"dataRandomSeed",
"defaultListenPort",
"deterministic",
"driverListenPort",
"dropRate",
"dropSeed",
"earlyStoppingRound",
"executionMode",
"extraSeed" "featureFraction",
"featureFractionByNode",
"featureFractionSeed",
"featuresCol",
"featuresShapCol",
"fobj" "improvementTolerance",
"initScoreCol",
"isEnableSparse",
"isProvideTrainingMetric",
"labelCol",
"lambdaL1",
"lambdaL2",
"leafPredictionCol",
"learningRate",
"matrixType",
"maxBin",
"maxBinByFeature",
"maxCatThreshold",
"maxCatToOnehot",
"maxDeltaStep",
"maxDepth",
"maxDrop",
"metric",
"microBatchSize",
"minDataInLeaf",
"minDataPerBin",
"minDataPerGroup",
"minGainToSplit",
"minSumHessianInLeaf",
"modelString",
"monotoneConstraints",
"monotoneConstraintsMethod",
"monotonePenalty",
"negBaggingFraction",
"numBatches",
"numIterations",
"numLeaves",
"numTasks",
"numThreads",
"objectiveSeed",
"otherRate",
"parallelism",
"passThroughArgs",
"posBaggingFraction",
"predictDisableShapeCheck",
"predictionCol",
"repartitionByGroupingColumn",
"seed",
"skipDrop",
"slotNames",
"timeout",
"topK",
"topRate",
"uniformDrop",
"useBarrierExecutionMode",
"useMissing",
"useSingleDatasetMode",
"validationIndicatorCol",
"verbosity",
"weightCol",
"xGBoostDartMode",
"zeroAsMissing",
"objective",
]
ParamList_LightGBM_Classifier = ParamList_LightGBM_Base + [
"isUnbalance",
"probabilityCol",
"rawPredictionCol",
"thresholds",
]
ParamList_LightGBM_Regressor = ParamList_LightGBM_Base + ["tweedieVariancePower"]
ParamList_LightGBM_Ranker = ParamList_LightGBM_Base + [
"groupCol",
"evalAt",
"labelGain",
"maxPosition",
]

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@@ -1,14 +1,17 @@
import numpy as np
import json
from typing import Union
from flaml.automl.spark import psSeries, F
import numpy as np
from pyspark.ml.evaluation import (
BinaryClassificationEvaluator,
RegressionEvaluator,
MulticlassClassificationEvaluator,
MultilabelClassificationEvaluator,
RankingEvaluator,
RegressionEvaluator,
)
from flaml.automl.spark import F, T, psDataFrame, psSeries, sparkDataFrame
def ps_group_counts(groups: Union[psSeries, np.ndarray]) -> np.ndarray:
if isinstance(groups, np.ndarray):
@@ -34,6 +37,16 @@ def _compute_label_from_probability(df, probability_col, prediction_col):
return df
def string_to_array(s):
try:
return json.loads(s)
except json.JSONDecodeError:
return []
string_to_array_udf = F.udf(string_to_array, T.ArrayType(T.DoubleType()))
def spark_metric_loss_score(
metric_name: str,
y_predict: psSeries,
@@ -133,6 +146,11 @@ def spark_metric_loss_score(
)
elif metric_name == "log_loss":
# For log_loss, prediction_col should be probability, and we need to convert it to label
# handle data like "{'type': '1', 'values': '[1, 2, 3]'}"
# Fix cannot resolve "array_max(prediction)" due to data type mismatch: Parameter 1 requires the "ARRAY" type,
# however "prediction" has the type "STRUCT<type: TINYINT, size: INT, indices: ARRAY<INT>, values: ARRAY<DOUBLE>>"
df = df.withColumn(prediction_col, df[prediction_col].cast(T.StringType()))
df = df.withColumn(prediction_col, string_to_array_udf(df[prediction_col]))
df = _compute_label_from_probability(df, prediction_col, prediction_col + "_label")
evaluator = MulticlassClassificationEvaluator(
metricName="logLoss",

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@@ -1,17 +1,19 @@
import logging
from typing import Union, List, Optional, Tuple
from typing import List, Optional, Tuple, Union
import numpy as np
from flaml.automl.spark import (
sparkDataFrame,
ps,
DataFrame,
F,
Series,
T,
_spark_major_minor_version,
ps,
psDataFrame,
psSeries,
_spark_major_minor_version,
DataFrame,
Series,
set_option,
sparkDataFrame,
)
logger = logging.getLogger(__name__)

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@@ -1,13 +1,15 @@
import inspect
import copy
import inspect
import time
from typing import Any, Optional
import numpy as np
from flaml import tune
from flaml.automl.logger import logger
from flaml.automl.ml import compute_estimator, train_estimator
from flaml.automl.spark import DataFrame, Series, psDataFrame, psSeries
from flaml.automl.time_series.ts_data import TimeSeriesDataset
from flaml.automl.spark import psDataFrame, psSeries, DataFrame, Series
class SearchState:
@@ -63,6 +65,7 @@ class SearchState:
custom_hp=None,
max_iter=None,
budget=None,
featurization="auto",
):
self.init_eci = learner_class.cost_relative2lgbm() if budget >= 0 else 1
self._search_space_domain = {}
@@ -80,6 +83,7 @@ class SearchState:
else:
data_size = data.shape
search_space = learner_class.search_space(data_size=data_size, task=task)
self.data_size = data_size
if custom_hp is not None:
@@ -89,9 +93,7 @@ class SearchState:
starting_point = AutoMLState.sanitize(starting_point)
if max_iter > 1 and not self.valid_starting_point(starting_point, search_space):
# If the number of iterations is larger than 1, remove invalid point
logger.warning(
"Starting point {} removed because it is outside of the search space".format(starting_point)
)
logger.warning(f"Starting point {starting_point} removed because it is outside of the search space")
starting_point = None
elif isinstance(starting_point, list):
starting_point = [AutoMLState.sanitize(x) for x in starting_point]
@@ -206,7 +208,7 @@ class SearchState:
self.val_loss, self.config = obj, config
def get_hist_config_sig(self, sample_size, config):
config_values = tuple([config[k] for k in self._hp_names if k in config])
config_values = tuple(config[k] for k in self._hp_names if k in config)
config_sig = str(sample_size) + "_" + str(config_values)
return config_sig
@@ -288,9 +290,11 @@ class AutoMLState:
budget = (
None
if state.time_budget < 0
else state.time_budget - state.time_from_start
if sample_size == state.data_size[0]
else (state.time_budget - state.time_from_start) / 2 * sample_size / state.data_size[0]
else (
state.time_budget - state.time_from_start
if sample_size == state.data_size[0]
else (state.time_budget - state.time_from_start) / 2 * sample_size / state.data_size[0]
)
)
(
@@ -351,6 +355,7 @@ class AutoMLState:
estimator: str,
config_w_resource: dict,
sample_size: Optional[int] = None,
is_retrain: bool = False,
):
if not sample_size:
sample_size = config_w_resource.get("FLAML_sample_size", len(self.y_train_all))
@@ -376,9 +381,8 @@ class AutoMLState:
this_estimator_kwargs[
"groups"
] = groups # NOTE: _train_with_config is after kwargs is updated to fit_kwargs_by_estimator
this_estimator_kwargs.update({"is_retrain": is_retrain})
budget = None if self.time_budget < 0 else self.time_budget - self.time_from_start
estimator, train_time = train_estimator(
X_train=sampled_X_train,
y_train=sampled_y_train,

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@@ -1,8 +1,9 @@
from typing import Optional, Union
import numpy as np
from flaml.automl.data import DataFrame, Series
from flaml.automl.task.task import Task, TS_FORECAST
from flaml.automl.task.task import TS_FORECAST, Task
def task_factory(

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@@ -1,43 +1,39 @@
import logging
import time
from typing import List, Optional
import numpy as np
from flaml.automl.data import TS_TIMESTAMP_COL, concat
from flaml.automl.ml import EstimatorSubclass, get_val_loss, default_cv_score_agg_func
from flaml.automl.task.task import (
Task,
get_classification_objective,
TS_FORECAST,
TS_FORECASTPANEL,
)
from flaml.config import RANDOM_SEED
from flaml.automl.spark import ps, psDataFrame, psSeries, pd
import numpy as np
from flaml.automl.data import TS_TIMESTAMP_COL, concat
from flaml.automl.ml import EstimatorSubclass, default_cv_score_agg_func, get_val_loss
from flaml.automl.spark import pd, ps, psDataFrame, psSeries
from flaml.automl.spark.utils import (
iloc_pandas_on_spark,
len_labels,
set_option,
spark_kFold,
train_test_split_pyspark,
unique_pandas_on_spark,
unique_value_first_index,
len_labels,
set_option,
)
from flaml.automl.task.task import TS_FORECAST, TS_FORECASTPANEL, Task, get_classification_objective
from flaml.config import RANDOM_SEED
try:
from scipy.sparse import issparse
except ImportError:
pass
try:
from sklearn.utils import shuffle
from sklearn.model_selection import (
train_test_split,
RepeatedStratifiedKFold,
RepeatedKFold,
GroupKFold,
TimeSeriesSplit,
GroupShuffleSplit,
RepeatedKFold,
RepeatedStratifiedKFold,
StratifiedGroupKFold,
TimeSeriesSplit,
train_test_split,
)
from sklearn.utils import shuffle
except ImportError:
pass
@@ -49,19 +45,31 @@ class GenericTask(Task):
def estimators(self):
if self._estimators is None:
# put this into a function to avoid circular dependency
from flaml.automl.contrib.histgb import HistGradientBoostingEstimator
from flaml.automl.model import (
XGBoostSklearnEstimator,
XGBoostLimitDepthEstimator,
RandomForestEstimator,
CatBoostEstimator,
ElasticNetEstimator,
ExtraTreesEstimator,
KNeighborsEstimator,
LassoLarsEstimator,
LGBMEstimator,
LRL1Classifier,
LRL2Classifier,
CatBoostEstimator,
ExtraTreesEstimator,
KNeighborsEstimator,
RandomForestEstimator,
SGDEstimator,
SparkAFTSurvivalRegressionEstimator,
SparkGBTEstimator,
SparkGLREstimator,
SparkLGBMEstimator,
SparkLinearRegressionEstimator,
SparkLinearSVCEstimator,
SparkNaiveBayesEstimator,
SparkRandomForestEstimator,
SVCEstimator,
TransformersEstimator,
TransformersEstimatorModelSelection,
SparkLGBMEstimator,
XGBoostLimitDepthEstimator,
XGBoostSklearnEstimator,
)
self._estimators = {
@@ -70,6 +78,7 @@ class GenericTask(Task):
"rf": RandomForestEstimator,
"lgbm": LGBMEstimator,
"lgbm_spark": SparkLGBMEstimator,
"rf_spark": SparkRandomForestEstimator,
"lrl1": LRL1Classifier,
"lrl2": LRL2Classifier,
"catboost": CatBoostEstimator,
@@ -77,6 +86,17 @@ class GenericTask(Task):
"kneighbor": KNeighborsEstimator,
"transformer": TransformersEstimator,
"transformer_ms": TransformersEstimatorModelSelection,
"histgb": HistGradientBoostingEstimator,
"svc": SVCEstimator,
"sgd": SGDEstimator,
"nb_spark": SparkNaiveBayesEstimator,
"enet": ElasticNetEstimator,
"lassolars": LassoLarsEstimator,
"glr_spark": SparkGLREstimator,
"lr_spark": SparkLinearRegressionEstimator,
"svc_spark": SparkLinearSVCEstimator,
"gbt_spark": SparkGBTEstimator,
"aft_spark": SparkAFTSurvivalRegressionEstimator,
}
return self._estimators
@@ -268,8 +288,8 @@ class GenericTask(Task):
seed=RANDOM_SEED,
)
columns_to_drop = [c for c in df_all_train.columns if c in [stratify_column, "sample_weight"]]
X_train = df_all_train.drop(columns_to_drop)
X_val = df_all_val.drop(columns_to_drop)
X_train = df_all_train.drop(columns=columns_to_drop)
X_val = df_all_val.drop(columns=columns_to_drop)
y_train = df_all_train[stratify_column]
y_val = df_all_val[stratify_column]
@@ -422,8 +442,8 @@ class GenericTask(Task):
X_train_all, y_train_all = shuffle(X_train_all, y_train_all, random_state=RANDOM_SEED)
if data_is_df:
X_train_all.reset_index(drop=True, inplace=True)
if isinstance(y_train_all, pd.Series):
y_train_all.reset_index(drop=True, inplace=True)
if isinstance(y_train_all, pd.Series):
y_train_all.reset_index(drop=True, inplace=True)
X_train, y_train = X_train_all, y_train_all
state.groups_all = state.groups
@@ -494,14 +514,37 @@ class GenericTask(Task):
last = first[i] + 1
rest.extend(range(last, len(y_train_all)))
X_first = X_train_all.iloc[first] if data_is_df else X_train_all[first]
X_rest = X_train_all.iloc[rest] if data_is_df else X_train_all[rest]
y_rest = (
y_train_all[rest]
if isinstance(y_train_all, np.ndarray)
else iloc_pandas_on_spark(y_train_all, rest)
if is_spark_dataframe
else y_train_all.iloc[rest]
)
if len(first) < len(y_train_all) / 2:
# Get X_rest and y_rest with drop, sparse matrix can't apply np.delete
X_rest = (
np.delete(X_train_all, first, axis=0)
if isinstance(X_train_all, np.ndarray)
else X_train_all.drop(first.tolist())
if data_is_df
else X_train_all[rest]
)
y_rest = (
np.delete(y_train_all, first, axis=0)
if isinstance(y_train_all, np.ndarray)
else y_train_all.drop(first.tolist())
if data_is_df
else y_train_all[rest]
)
else:
X_rest = (
iloc_pandas_on_spark(X_train_all, rest)
if is_spark_dataframe
else X_train_all.iloc[rest]
if data_is_df
else X_train_all[rest]
)
y_rest = (
iloc_pandas_on_spark(y_train_all, rest)
if is_spark_dataframe
else y_train_all.iloc[rest]
if data_is_df
else y_train_all[rest]
)
stratify = y_rest if split_type == "stratified" else None
X_train, X_val, y_train, y_val = self._train_test_split(
state, X_rest, y_rest, first, rest, split_ratio, stratify
@@ -510,6 +553,12 @@ class GenericTask(Task):
y_train = concat(label_set, y_train) if data_is_df else np.concatenate([label_set, y_train])
X_val = concat(X_first, X_val)
y_val = concat(label_set, y_val) if data_is_df else np.concatenate([label_set, y_val])
if isinstance(y_train, (psDataFrame, pd.DataFrame)) and y_train.shape[1] == 1:
y_train = y_train[y_train.columns[0]]
y_val = y_val[y_val.columns[0]]
y_train.name = y_val.name = y_rest.name
elif self.is_regression():
X_train, X_val, y_train, y_val = self._train_test_split(
state, X_train_all, y_train_all, split_ratio=split_ratio
@@ -656,7 +705,6 @@ class GenericTask(Task):
fit_kwargs = {}
if cv_score_agg_func is None:
cv_score_agg_func = default_cv_score_agg_func
start_time = time.time()
val_loss_folds = []
log_metric_folds = []
metric = None
@@ -721,10 +769,10 @@ class GenericTask(Task):
if not is_spark_dataframe:
y_train, y_val = y_train_split[train_index], y_train_split[val_index]
if weight is not None:
fit_kwargs["sample_weight"], weight_val = (
weight[train_index],
weight[val_index],
fit_kwargs["sample_weight"] = (
weight[train_index] if isinstance(weight, np.ndarray) else weight.iloc[train_index]
)
weight_val = weight[val_index] if isinstance(weight, np.ndarray) else weight.iloc[val_index]
if groups is not None:
fit_kwargs["groups"] = (
groups[train_index] if isinstance(groups, np.ndarray) else groups.iloc[train_index]
@@ -763,8 +811,6 @@ class GenericTask(Task):
if is_spark_dataframe:
X_train.spark.unpersist() # uncache data to free memory
X_val.spark.unpersist() # uncache data to free memory
if budget and time.time() - start_time >= budget:
break
val_loss, metric = cv_score_agg_func(val_loss_folds, log_metric_folds)
n = total_fold_num
pred_time /= n
@@ -807,27 +853,23 @@ class GenericTask(Task):
elif self.is_ts_forecastpanel():
estimator_list = ["tft"]
else:
estimator_list = [
"lgbm",
"rf",
"xgboost",
"extra_tree",
"xgb_limitdepth",
"lgbm_spark",
"rf_spark",
"sgd",
]
try:
import catboost
estimator_list = [
"lgbm",
"rf",
"catboost",
"xgboost",
"extra_tree",
"xgb_limitdepth",
"lgbm_spark",
]
estimator_list += ["catboost"]
except ImportError:
estimator_list = [
"lgbm",
"rf",
"xgboost",
"extra_tree",
"xgb_limitdepth",
"lgbm_spark",
]
pass
# if self.is_ts_forecast():
# # catboost is removed because it has a `name` parameter, making it incompatible with hcrystalball
# if "catboost" in estimator_list:
@@ -859,9 +901,7 @@ class GenericTask(Task):
return metric
if self.is_nlp():
from flaml.automl.nlp.utils import (
load_default_huggingface_metric_for_task,
)
from flaml.automl.nlp.utils import load_default_huggingface_metric_for_task
return load_default_huggingface_metric_for_task(self.name)
elif self.is_binary():

View File

@@ -1,6 +1,8 @@
from abc import ABC, abstractmethod
from typing import TYPE_CHECKING, List, Optional, Tuple, Union
import numpy as np
from flaml.automl.data import DataFrame, Series, psDataFrame, psSeries
if TYPE_CHECKING:
@@ -190,7 +192,7 @@ class Task(ABC):
* Valid str options depend on different tasks.
For classification tasks, valid choices are
["auto", 'stratified', 'uniform', 'time', 'group']. "auto" -> stratified.
For regression tasks, valid choices are ["auto", 'uniform', 'time'].
For regression tasks, valid choices are ["auto", 'uniform', 'time', 'group'].
"auto" -> uniform.
For time series forecast tasks, must be "auto" or 'time'.
For ranking task, must be "auto" or 'group'.

View File

@@ -2,26 +2,25 @@ import logging
import time
from typing import List
import pandas as pd
import numpy as np
import pandas as pd
from scipy.sparse import issparse
from sklearn.model_selection import (
GroupKFold,
TimeSeriesSplit,
)
from flaml.automl.ml import get_val_loss, default_cv_score_agg_func
from flaml.automl.time_series.ts_data import (
TimeSeriesDataset,
DataTransformerTS,
normalize_ts_data,
)
from flaml.automl.ml import default_cv_score_agg_func, get_val_loss
from flaml.automl.task.task import (
Task,
get_classification_objective,
TS_FORECAST,
TS_FORECASTPANEL,
Task,
get_classification_objective,
)
from flaml.automl.time_series.ts_data import (
DataTransformerTS,
TimeSeriesDataset,
normalize_ts_data,
)
logger = logging.getLogger(__name__)
@@ -33,18 +32,24 @@ class TimeSeriesTask(Task):
if self._estimators is None:
# put this into a function to avoid circular dependency
from flaml.automl.time_series import (
ARIMA,
LGBM_TS,
RF_TS,
SARIMAX,
Average,
CatBoost_TS,
ExtraTrees_TS,
HoltWinters,
LassoLars_TS,
Naive,
Orbit,
Prophet,
SeasonalAverage,
SeasonalNaive,
TCNEstimator,
TemporalFusionTransformerEstimator,
XGBoost_TS,
XGBoostLimitDepth_TS,
RF_TS,
LGBM_TS,
ExtraTrees_TS,
CatBoost_TS,
Prophet,
Orbit,
ARIMA,
SARIMAX,
TemporalFusionTransformerEstimator,
HoltWinters,
)
self._estimators = {
@@ -58,8 +63,19 @@ class TimeSeriesTask(Task):
"holt-winters": HoltWinters,
"catboost": CatBoost_TS,
"tft": TemporalFusionTransformerEstimator,
"lassolars": LassoLars_TS,
"tcn": TCNEstimator,
"snaive": SeasonalNaive,
"naive": Naive,
"savg": SeasonalAverage,
"avg": Average,
}
if self._estimators["tcn"] is None:
# remove TCN if import failed
del self._estimators["tcn"]
logger.info("Couldn't import pytorch_lightning, skipping TCN estimator")
try:
from prophet import Prophet as foo
@@ -72,7 +88,7 @@ class TimeSeriesTask(Task):
self._estimators["orbit"] = Orbit
except ImportError:
logger.info("Couldn't import Prophet, skipping")
logger.info("Couldn't import orbit, skipping")
return self._estimators

View File

@@ -1,17 +1,27 @@
from .ts_model import (
Prophet,
Orbit,
ARIMA,
SARIMAX,
HoltWinters,
LGBM_TS,
XGBoost_TS,
RF_TS,
ExtraTrees_TS,
XGBoostLimitDepth_TS,
CatBoost_TS,
TimeSeriesEstimator,
)
from .tft import TemporalFusionTransformerEstimator
from .ts_model import (
ARIMA,
LGBM_TS,
RF_TS,
SARIMAX,
Average,
CatBoost_TS,
ExtraTrees_TS,
HoltWinters,
LassoLars_TS,
Naive,
Orbit,
Prophet,
SeasonalAverage,
SeasonalNaive,
TimeSeriesEstimator,
XGBoost_TS,
XGBoostLimitDepth_TS,
)
try:
from .tcn import TCNEstimator
except ImportError:
TCNEstimator = None
from .ts_data import TimeSeriesDataset

View File

@@ -1,5 +1,5 @@
import math
import datetime
import math
from functools import lru_cache
import pandas as pd

View File

@@ -12,8 +12,8 @@ except ImportError:
DataFrame = Series = None
import numpy as np
from sklearn.preprocessing import StandardScaler
from sklearn.decomposition import PCA
from sklearn.preprocessing import StandardScaler
def make_lag_features(X: pd.DataFrame, y: pd.Series, lags: int):

View File

@@ -0,0 +1,285 @@
# This file is adapted from
# https://github.com/locuslab/TCN/blob/master/TCN/tcn.py
# https://github.com/locuslab/TCN/blob/master/TCN/adding_problem/add_test.py
import datetime
import logging
import time
import pandas as pd
import pytorch_lightning as pl
import torch
import torch.nn as nn
import torch.optim as optim
from pytorch_lightning.callbacks import EarlyStopping, LearningRateMonitor
from pytorch_lightning.loggers import TensorBoardLogger
from torch.nn.utils import weight_norm
from torch.utils.data import DataLoader, TensorDataset
from flaml import tune
from flaml.automl.data import add_time_idx_col
from flaml.automl.logger import logger, logger_formatter
from flaml.automl.time_series.ts_data import TimeSeriesDataset
from flaml.automl.time_series.ts_model import TimeSeriesEstimator
class Chomp1d(nn.Module):
def __init__(self, chomp_size):
super().__init__()
self.chomp_size = chomp_size
def forward(self, x):
return x[:, :, : -self.chomp_size].contiguous()
class TemporalBlock(nn.Module):
def __init__(self, n_inputs, n_outputs, kernel_size, stride, dilation, padding, dropout=0.2):
super().__init__()
self.conv1 = weight_norm(
nn.Conv1d(n_inputs, n_outputs, kernel_size, stride=stride, padding=padding, dilation=dilation)
)
self.chomp1 = Chomp1d(padding)
self.relu1 = nn.ReLU()
self.dropout1 = nn.Dropout(dropout)
self.conv2 = weight_norm(
nn.Conv1d(n_outputs, n_outputs, kernel_size, stride=stride, padding=padding, dilation=dilation)
)
self.chomp2 = Chomp1d(padding)
self.relu2 = nn.ReLU()
self.dropout2 = nn.Dropout(dropout)
self.net = nn.Sequential(
self.conv1, self.chomp1, self.relu1, self.dropout1, self.conv2, self.chomp2, self.relu2, self.dropout2
)
self.downsample = nn.Conv1d(n_inputs, n_outputs, 1) if n_inputs != n_outputs else None
self.relu = nn.ReLU()
self.init_weights()
def init_weights(self):
self.conv1.weight.data.normal_(0, 0.01)
self.conv2.weight.data.normal_(0, 0.01)
if self.downsample is not None:
self.downsample.weight.data.normal_(0, 0.01)
def forward(self, x):
out = self.net(x)
res = x if self.downsample is None else self.downsample(x)
return self.relu(out + res)
class TCNForecaster(nn.Module):
def __init__(
self,
input_feature_num,
num_outputs,
num_channels,
kernel_size=2,
dropout=0.2,
):
super().__init__()
layers = []
num_levels = len(num_channels)
for i in range(num_levels):
dilation_size = 2**i
in_channels = input_feature_num if i == 0 else num_channels[i - 1]
out_channels = num_channels[i]
layers += [
TemporalBlock(
in_channels,
out_channels,
kernel_size,
stride=1,
dilation=dilation_size,
padding=(kernel_size - 1) * dilation_size,
dropout=dropout,
)
]
self.network = nn.Sequential(*layers)
self.linear = nn.Linear(num_channels[-1], num_outputs)
def forward(self, x):
y1 = self.network(x)
return self.linear(y1[:, :, -1])
class TCNForecasterLightningModule(pl.LightningModule):
def __init__(self, model: TCNForecaster, learning_rate: float = 1e-3):
super().__init__()
self.model = model
self.learning_rate = learning_rate
self.loss_fn = nn.MSELoss()
def forward(self, x):
return self.model(x)
def step(self, batch, batch_idx):
x, y = batch
y_hat = self.model(x)
loss = self.loss_fn(y_hat, y)
return loss
def training_step(self, batch, batch_idx):
loss = self.step(batch, batch_idx)
self.log("train_loss", loss)
return loss
def validation_step(self, batch, batch_idx):
loss = self.step(batch, batch_idx)
self.log("val_loss", loss)
return loss
def configure_optimizers(self):
return torch.optim.Adam(self.parameters(), lr=self.learning_rate)
class DataframeDataset(torch.utils.data.Dataset):
def __init__(self, dataframe, target_column, features_columns, sequence_length, train=True):
self.data = torch.tensor(dataframe[features_columns].to_numpy(), dtype=torch.float)
self.sequence_length = sequence_length
if train:
self.labels = torch.tensor(dataframe[target_column].to_numpy(), dtype=torch.float)
self.is_train = train
def __len__(self):
return len(self.data) - self.sequence_length + 1
def __getitem__(self, idx):
data = self.data[idx : idx + self.sequence_length]
data = data.permute(1, 0)
if self.is_train:
label = self.labels[idx : idx + self.sequence_length]
return data, label
else:
return data
class TCNEstimator(TimeSeriesEstimator):
"""The class for tuning TCN Forecaster"""
@classmethod
def search_space(cls, data, task, pred_horizon, **params):
space = {
"num_levels": {
"domain": tune.randint(lower=4, upper=20), # hidden = 2^num_hidden
"init_value": 4,
},
"num_hidden": {
"domain": tune.randint(lower=4, upper=8), # hidden = 2^num_hidden
"init_value": 5,
},
"kernel_size": {
"domain": tune.choice([2, 3, 5, 7]), # common choices for kernel size
"init_value": 3,
},
"dropout": {
"domain": tune.uniform(lower=0.0, upper=0.5), # standard range for dropout
"init_value": 0.1,
},
"learning_rate": {
"domain": tune.loguniform(lower=1e-4, upper=1e-1), # typical range for learning rate
"init_value": 1e-3,
},
}
return space
def __init__(self, task="ts_forecast", n_jobs=1, **params):
super().__init__(task, **params)
logging.getLogger("pytorch_lightning").setLevel(logging.WARNING)
def fit(self, X_train: TimeSeriesDataset, y_train=None, budget=None, **kwargs):
start_time = time.time()
if budget is not None:
deltabudget = datetime.timedelta(seconds=budget)
else:
deltabudget = None
X_train = self.enrich(X_train)
super().fit(X_train, y_train, budget, **kwargs)
self.batch_size = kwargs.get("batch_size", 64)
self.horizon = kwargs.get("period", 1)
self.feature_cols = X_train.time_varying_known_reals
self.target_col = X_train.target_names[0]
train_dataset = DataframeDataset(
X_train.train_data,
self.target_col,
self.feature_cols,
self.horizon,
)
train_loader = DataLoader(train_dataset, batch_size=self.batch_size, shuffle=False)
if not X_train.test_data.empty:
val_dataset = DataframeDataset(
X_train.test_data,
self.target_col,
self.feature_cols,
self.horizon,
)
else:
val_dataset = DataframeDataset(
X_train.train_data.sample(frac=0.2, random_state=kwargs.get("random_state", 0)),
self.target_col,
self.feature_cols,
self.horizon,
)
val_loader = DataLoader(val_dataset, batch_size=self.batch_size, shuffle=False)
model = TCNForecaster(
len(self.feature_cols),
self.horizon,
[2 ** self.params["num_hidden"]] * self.params["num_levels"],
self.params["kernel_size"],
self.params["dropout"],
)
pl_module = TCNForecasterLightningModule(model, self.params["learning_rate"])
# Training loop
# gpus is deprecated in v1.7 and removed in v2.0
# accelerator="auto" can cast all condition.
trainer = pl.Trainer(
max_epochs=kwargs.get("max_epochs", 10),
accelerator="auto",
callbacks=[
EarlyStopping(monitor="val_loss", min_delta=1e-4, patience=10, verbose=False, mode="min"),
LearningRateMonitor(),
],
logger=TensorBoardLogger(kwargs.get("log_dir", "logs/lightning_logs")), # logging results to a tensorboard
max_time=deltabudget,
enable_model_summary=False,
enable_progress_bar=False,
)
trainer.fit(
pl_module,
train_dataloaders=train_loader,
val_dataloaders=val_loader,
)
best_model = trainer.model
self._model = best_model
train_time = time.time() - start_time
return train_time
def predict(self, X):
X = self.enrich(X)
if isinstance(X, TimeSeriesDataset):
df = X.X_val
else:
df = X
dataset = DataframeDataset(
df,
self.target_col,
self.feature_cols,
self.horizon,
train=False,
)
data_loader = DataLoader(dataset, batch_size=self.batch_size, shuffle=False)
self._model.eval()
raw_preds = []
for batch_x in data_loader:
raw_pred = self._model(batch_x)
raw_preds.append(raw_pred)
raw_preds = torch.cat(raw_preds, dim=0)
preds = pd.Series(raw_preds.detach().numpy().ravel())
return preds

View File

@@ -105,6 +105,7 @@ class TemporalFusionTransformerEstimator(TimeSeriesEstimator):
def fit(self, X_train, y_train, budget=None, **kwargs):
import warnings
import pytorch_lightning as pl
import torch
from pytorch_forecasting import TemporalFusionTransformer

View File

@@ -2,7 +2,7 @@ import copy
import datetime
import math
from dataclasses import dataclass, field
from typing import List, Optional, Callable, Dict, Generator, Union
from typing import Callable, Dict, Generator, List, Optional, Union
import numpy as np
@@ -10,9 +10,9 @@ try:
import pandas as pd
from pandas import DataFrame, Series, to_datetime
from scipy.sparse import issparse
from sklearn.preprocessing import LabelEncoder
from sklearn.impute import SimpleImputer
from sklearn.compose import ColumnTransformer
from sklearn.impute import SimpleImputer
from sklearn.preprocessing import LabelEncoder
from .feature import monthly_fourier_features
except ImportError:
@@ -26,6 +26,8 @@ except ImportError:
DataFrame = Series = None
# dataclass will remove empty default value even with field(default_factory=lambda: [])
# Change into default=None to place the attr
@dataclass
class TimeSeriesDataset:
train_data: pd.DataFrame
@@ -34,10 +36,10 @@ class TimeSeriesDataset:
target_names: List[str]
frequency: str
test_data: pd.DataFrame
time_varying_known_categoricals: List[str] = field(default_factory=lambda: [])
time_varying_known_reals: List[str] = field(default_factory=lambda: [])
time_varying_unknown_categoricals: List[str] = field(default_factory=lambda: [])
time_varying_unknown_reals: List[str] = field(default_factory=lambda: [])
time_varying_known_categoricals: List[str] = field(default=None)
time_varying_known_reals: List[str] = field(default=None)
time_varying_unknown_categoricals: List[str] = field(default=None)
time_varying_unknown_reals: List[str] = field(default=None)
def __init__(
self,
@@ -391,7 +393,7 @@ class DataTransformerTS:
for column in X.columns:
# sklearn/utils/validation.py needs int/float values
if X[column].dtype.name in ("object", "category"):
if X[column].dtype.name in ("object", "category", "string"):
if (
# drop columns where all values are the same
X[column].nunique() == 1
@@ -403,7 +405,7 @@ class DataTransformerTS:
self.cat_columns.append(column)
elif X[column].nunique(dropna=True) < 2:
self.drop_columns.append(column)
elif X[column].dtype.name == "datetime64[ns]":
elif X[column].dtype.name in ["datetime64[ns]", "datetime64[s]"]:
pass # these will be processed at model level,
# so they can also be done in the predict method
else:

View File

@@ -1,8 +1,8 @@
import time
import logging
import os
from datetime import datetime
import math
import os
import time
from datetime import datetime
from typing import List, Optional, Union
try:
@@ -22,26 +22,27 @@ except ImportError:
import numpy as np
from flaml import tune
from flaml.model import (
suppress_stdout_stderr,
SKLearnEstimator,
logger,
LGBMEstimator,
XGBoostSklearnEstimator,
RandomForestEstimator,
ExtraTreesEstimator,
XGBoostLimitDepthEstimator,
from flaml.automl.data import TS_TIMESTAMP_COL, TS_VALUE_COL
from flaml.automl.model import (
CatBoostEstimator,
)
from flaml.data import TS_TIMESTAMP_COL, TS_VALUE_COL
from flaml.automl.time_series.ts_data import (
TimeSeriesDataset,
enrich_dataset,
enrich_dataframe,
normalize_ts_data,
create_forward_frame,
ExtraTreesEstimator,
LassoLarsEstimator,
LGBMEstimator,
RandomForestEstimator,
SKLearnEstimator,
XGBoostLimitDepthEstimator,
XGBoostSklearnEstimator,
logger,
suppress_stdout_stderr,
)
from flaml.automl.task import Task
from flaml.automl.time_series.ts_data import (
TimeSeriesDataset,
create_forward_frame,
enrich_dataframe,
enrich_dataset,
normalize_ts_data,
)
class TimeSeriesEstimator(SKLearnEstimator):
@@ -143,6 +144,7 @@ class TimeSeriesEstimator(SKLearnEstimator):
def score(self, X_val: DataFrame, y_val: Series, **kwargs):
from sklearn.metrics import r2_score
from ..ml import metric_loss_score
y_pred = self.predict(X_val, **kwargs)
@@ -610,15 +612,13 @@ class HoltWinters(StatsModelsEstimator):
): # this would prevent heuristic initialization to work properly
self.params["seasonal"] = None
if (
self.params["seasonal"] == "mul" and (train_df.y == 0).sum() > 0
self.params["seasonal"] == "mul" and (train_df[target_col] == 0).sum() > 0
): # cannot have multiplicative seasonality in this case
self.params["seasonal"] = "add"
if self.params["trend"] == "mul" and (train_df.y == 0).sum() > 0:
if self.params["trend"] == "mul" and (train_df[target_col] == 0).sum() > 0:
self.params["trend"] = "add"
if not self.params["seasonal"] or self.params["trend"] not in ["mul", "add"]:
self.params["damped_trend"] = False
model = HWExponentialSmoothing(
train_df[[target_col]],
damped_trend=self.params["damped_trend"],
@@ -632,6 +632,125 @@ class HoltWinters(StatsModelsEstimator):
return train_time
class SimpleForecaster(StatsModelsEstimator):
"""Base class for Naive Forecaster like Seasonal Naive, Naive, Seasonal Average, Average"""
@classmethod
def _search_space(cls, data: TimeSeriesDataset, task: Task, pred_horizon: int, **params):
return {
"season": {
"domain": tune.randint(1, pred_horizon),
"init_value": pred_horizon,
}
}
def joint_preprocess(self, X_train, y_train=None):
X_train = self.enrich(X_train)
self.regressors = []
if isinstance(X_train, TimeSeriesDataset):
data = X_train
target_col = data.target_names[0]
# this class only supports univariate regression
train_df = data.train_data[self.regressors + [target_col]]
train_df.index = to_datetime(data.train_data[data.time_col])
else:
target_col = TS_VALUE_COL
train_df = self._join(X_train, y_train)
self.time_col = data.time_col
self.target_names = data.target_names
train_df = self._preprocess(train_df)
return train_df, target_col
def fit(self, X_train, y_train=None, budget=None, **kwargs):
import warnings
warnings.filterwarnings("ignore")
from statsmodels.tsa.holtwinters import SimpleExpSmoothing
self.season = self.params.get("season", 1)
current_time = time.time()
super().fit(X_train, y_train, budget=budget, **kwargs)
train_df, target_col = self.joint_preprocess(X_train, y_train)
model = SimpleExpSmoothing(
train_df[[target_col]],
)
with suppress_stdout_stderr():
model = model.fit(smoothing_level=self.smoothing_level)
train_time = time.time() - current_time
self._model = model
return train_time
class SeasonalNaive(SimpleForecaster):
smoothing_level = 1.0
def predict(self, X, **kwargs):
if isinstance(X, int):
forecasts = []
for i in range(X):
forecast = self._model.forecast(steps=self.season)[0]
forecasts.append(forecast)
return pd.Series(forecasts)
else:
return super().predict(X, **kwargs)
class Naive(SimpleForecaster):
smoothing_level = 0.0
@classmethod
def _search_space(cls, data: TimeSeriesDataset, task: Task, pred_horizon: int, **params):
return {}
def predict(self, X, **kwargs):
if isinstance(X, int):
last_observation = self._model.params["initial_level"]
return pd.Series([last_observation] * X)
else:
return super().predict(X, **kwargs)
class SeasonalAverage(SimpleForecaster):
def fit(self, X_train, y_train=None, budget=None, **kwargs):
from statsmodels.tsa.ar_model import AutoReg, ar_select_order
start_time = time.time()
self.season = kwargs.get("season", 1) # seasonality period
train_df, target_col = self.joint_preprocess(X_train, y_train)
selection_res = ar_select_order(train_df[target_col], maxlag=self.season)
# Fit autoregressive model with optimal order
model = AutoReg(train_df[target_col], lags=selection_res.ar_lags)
self._model = model.fit()
end_time = time.time()
return end_time - start_time
class Average(SimpleForecaster):
@classmethod
def _search_space(cls, data: TimeSeriesDataset, task: Task, pred_horizon: int, **params):
return {}
def fit(self, X_train, y_train=None, budget=None, **kwargs):
from statsmodels.tsa.ar_model import AutoReg
start_time = time.time()
train_df, target_col = self.joint_preprocess(X_train, y_train)
model = AutoReg(train_df[target_col], lags=0)
self._model = model.fit()
end_time = time.time()
return end_time - start_time
class TS_SKLearn(TimeSeriesEstimator):
"""The class for tuning SKLearn Regressors for time-series forecasting"""
@@ -758,3 +877,7 @@ class XGBoostLimitDepth_TS(TS_SKLearn):
# catboost regressor is invalid because it has a `name` parameter, making it incompatible with hcrystalball
class CatBoost_TS(TS_SKLearn):
base_class = CatBoostEstimator
class LassoLars_TS(TS_SKLearn):
base_class = LassoLarsEstimator

View File

@@ -4,14 +4,14 @@
"""
import json
from typing import IO
from contextlib import contextmanager
import logging
from contextlib import contextmanager
from typing import IO
logger = logging.getLogger("flaml.automl")
class TrainingLogRecord(object):
class TrainingLogRecord:
def __init__(
self,
record_id: int,
@@ -52,7 +52,7 @@ class TrainingLogCheckPoint(TrainingLogRecord):
self.curr_best_record_id = curr_best_record_id
class TrainingLogWriter(object):
class TrainingLogWriter:
def __init__(self, output_filename: str):
self.output_filename = output_filename
self.file = None
@@ -79,7 +79,7 @@ class TrainingLogWriter(object):
sample_size,
):
if self.file is None:
raise IOError("Call open() to open the output file first.")
raise OSError("Call open() to open the output file first.")
if validation_loss is None:
raise ValueError("TEST LOSS NONE ERROR!!!")
record = TrainingLogRecord(
@@ -109,7 +109,7 @@ class TrainingLogWriter(object):
def checkpoint(self):
if self.file is None:
raise IOError("Call open() to open the output file first.")
raise OSError("Call open() to open the output file first.")
if self.current_best_loss_record_id is None:
logger.warning("flaml.training_log: checkpoint() called before any record is written, skipped.")
return
@@ -124,7 +124,7 @@ class TrainingLogWriter(object):
self.file = None # for pickle
class TrainingLogReader(object):
class TrainingLogReader:
def __init__(self, filename: str):
self.filename = filename
self.file = None
@@ -134,7 +134,7 @@ class TrainingLogReader(object):
def records(self):
if self.file is None:
raise IOError("Call open() before reading log file.")
raise OSError("Call open() before reading log file.")
for line in self.file:
data = json.loads(line)
if len(data) == 1:
@@ -149,7 +149,7 @@ class TrainingLogReader(object):
def get_record(self, record_id) -> TrainingLogRecord:
if self.file is None:
raise IOError("Call open() before reading log file.")
raise OSError("Call open() before reading log file.")
for rec in self.records():
if rec.record_id == record_id:
return rec

View File

@@ -1,9 +0,0 @@
import warnings
from flaml.automl.data import *
warnings.warn(
"Importing from `flaml.data` is deprecated. Please use `flaml.automl.data`.",
DeprecationWarning,
)

View File

@@ -14,7 +14,6 @@ estimator.fit(X_train, y_train)
estimator.predict(X_test, y_test)
```
1. Use AutoML.fit(). set `starting_points="data"` and `max_iter=0`.
```python
@@ -36,10 +35,17 @@ automl.fit(X_train, y_train, **automl_settings)
from flaml.default import preprocess_and_suggest_hyperparams
X, y = load_iris(return_X_y=True, as_frame=True)
X_train, X_test, y_train, y_test = train_test_split(X, y, test_size=0.33, random_state=42)
hyperparams, estimator_class, X_transformed, y_transformed, feature_transformer, label_transformer = preprocess_and_suggest_hyperparams(
"classification", X_train, y_train, "lgbm"
X_train, X_test, y_train, y_test = train_test_split(
X, y, test_size=0.33, random_state=42
)
(
hyperparams,
estimator_class,
X_transformed,
y_transformed,
feature_transformer,
label_transformer,
) = preprocess_and_suggest_hyperparams("classification", X_train, y_train, "lgbm")
model = estimator_class(**hyperparams) # estimator_class is LGBMClassifier
model.fit(X_transformed, y_train) # LGBMClassifier can handle raw labels
X_test = feature_transformer.transform(X_test) # preprocess test data
@@ -172,7 +178,7 @@ Change "binary" into "multiclass" or "regression" for the other tasks.
For more technical details, please check our research paper.
* [Mining Robust Default Configurations for Resource-constrained AutoML](https://arxiv.org/abs/2202.09927). Moe Kayali, Chi Wang. arXiv preprint arXiv:2202.09927 (2022).
- [Mining Robust Default Configurations for Resource-constrained AutoML](https://arxiv.org/abs/2202.09927). Moe Kayali, Chi Wang. arXiv preprint arXiv:2202.09927 (2022).
```bibtex
@article{Kayali2022default,

View File

@@ -1,18 +1,18 @@
from .suggest import (
suggest_config,
suggest_learner,
suggest_hyperparams,
preprocess_and_suggest_hyperparams,
meta_feature,
)
from .estimator import (
flamlize_estimator,
LGBMClassifier,
LGBMRegressor,
XGBClassifier,
XGBRegressor,
RandomForestClassifier,
RandomForestRegressor,
ExtraTreesClassifier,
ExtraTreesRegressor,
LGBMClassifier,
LGBMRegressor,
RandomForestClassifier,
RandomForestRegressor,
XGBClassifier,
XGBRegressor,
flamlize_estimator,
)
from .suggest import (
meta_feature,
preprocess_and_suggest_hyperparams,
suggest_config,
suggest_hyperparams,
suggest_learner,
)

View File

@@ -1,5 +1,7 @@
from functools import wraps
from flaml.automl.task.task import CLASSIFICATION
from .suggest import preprocess_and_suggest_hyperparams
DEFAULT_LOCATION = "default_location"
@@ -105,7 +107,12 @@ def flamlize_estimator(super_class, name: str, task: str, alternatives=None):
# if hasattr(self, "_classes"):
# self._classes = self._label_transformer.classes_
# else:
self.classes_ = self._label_transformer.classes_
try:
self.classes_ = self._label_transformer.classes_
except AttributeError:
# xgboost 2: AttributeError: can't set attribute
if "xgb" not in estimator_name:
raise
if "xgb" not in estimator_name:
# rf and et would do inverse transform automatically; xgb doesn't
self._label_transformer = None

View File

@@ -1,7 +1,7 @@
import numpy as np
import pandas as pd
from sklearn.preprocessing import RobustScaler
from sklearn.metrics import pairwise_distances
from sklearn.preprocessing import RobustScaler
def _augment(row):
@@ -12,7 +12,7 @@ def _augment(row):
def construct_portfolio(regret_matrix, meta_features, regret_bound):
"""The portfolio construction algorithm.
(Reference)[https://arxiv.org/abs/2202.09927].
Reference: [Mining Robust Default Configurations for Resource-constrained AutoML](https://arxiv.org/abs/2202.09927).
Args:
regret_matrix: A dataframe of regret matrix.

View File

@@ -1,11 +1,13 @@
import pandas as pd
import numpy as np
import argparse
from pathlib import Path
import json
from pathlib import Path
import numpy as np
import pandas as pd
from sklearn.preprocessing import RobustScaler
from flaml.default import greedy
from flaml.default.regret import load_result, build_regret
from flaml.default.regret import build_regret, load_result
from flaml.version import __version__
regret_bound = 0.01
@@ -67,7 +69,7 @@ def build_portfolio(meta_features, regret, strategy):
def load_json(filename):
"""Returns the contents of json file filename."""
with open(filename, "r") as f:
with open(filename) as f:
return json.load(f)

View File

@@ -1,5 +1,6 @@
import argparse
from os import path
import pandas as pd

View File

@@ -1,11 +1,13 @@
import numpy as np
import json
import logging
import pathlib
import json
import numpy as np
from flaml.automl.data import DataTransformer
from flaml.automl.task.task import CLASSIFICATION, get_classification_objective
from flaml.automl.task.generic_task import len_labels
from flaml.automl.task.factory import task_factory
from flaml.automl.task.generic_task import len_labels
from flaml.automl.task.task import CLASSIFICATION, get_classification_objective
from flaml.version import __version__
try:
@@ -41,7 +43,7 @@ def meta_feature(task, X_train, y_train, meta_feature_names):
# 'numpy.ndarray' object has no attribute 'select_dtypes'
this_feature.append(1) # all features are numeric
else:
raise ValueError("Feature {} not implemented. ".format(each_feature_name))
raise ValueError(f"Feature {each_feature_name} not implemented. ")
return this_feature
@@ -55,7 +57,7 @@ def load_config_predictor(estimator_name, task, location=None):
task = "multiclass" if task == "multi" else task # TODO: multi -> multiclass?
try:
location = location or LOCATION
with open(f"{location}/{estimator_name}/{task}.json", "r") as f:
with open(f"{location}/{estimator_name}/{task}.json") as f:
CONFIG_PREDICTORS[key] = predictor = json.load(f)
except FileNotFoundError:
raise FileNotFoundError(f"Portfolio has not been built for {estimator_name} on {task} task.")

0
flaml/fabric/__init__.py Normal file
View File

1021
flaml/fabric/mlflow.py Normal file

File diff suppressed because it is too large Load Diff

View File

@@ -2,7 +2,6 @@ import warnings
from flaml.automl.ml import *
warnings.warn(
"Importing from `flaml.ml` is deprecated. Please use `flaml.automl.ml`.",
DeprecationWarning,

View File

@@ -1,9 +0,0 @@
import warnings
from flaml.automl.model import *
warnings.warn(
"Importing from `flaml.model` is deprecated. Please use `flaml.automl.model`.",
DeprecationWarning,
)

View File

@@ -4,7 +4,8 @@ FLAML includes *ChaCha* which is an automatic hyperparameter tuning solution for
For more technical details about *ChaCha*, please check our paper.
* [ChaCha for Online AutoML](https://www.microsoft.com/en-us/research/publication/chacha-for-online-automl/). Qingyun Wu, Chi Wang, John Langford, Paul Mineiro and Marco Rossi. ICML 2021.
- [ChaCha for Online AutoML](https://www.microsoft.com/en-us/research/publication/chacha-for-online-automl/). Qingyun Wu, Chi Wang, John Langford, Paul Mineiro and Marco Rossi. ICML 2021.
```
@inproceedings{wu2021chacha,
title={ChaCha for online AutoML},
@@ -23,8 +24,9 @@ An example of online namespace interactions tuning in VW:
```python
# require: pip install flaml[vw]
from flaml import AutoVW
'''create an AutoVW instance for tuning namespace interactions'''
autovw = AutoVW(max_live_model_num=5, search_space={'interactions': AutoVW.AUTOMATIC})
"""create an AutoVW instance for tuning namespace interactions"""
autovw = AutoVW(max_live_model_num=5, search_space={"interactions": AutoVW.AUTOMATIC})
```
An example of online tuning of both namespace interactions and learning rate in VW:
@@ -33,12 +35,18 @@ An example of online tuning of both namespace interactions and learning rate in
# require: pip install flaml[vw]
from flaml import AutoVW
from flaml.tune import loguniform
''' create an AutoVW instance for tuning namespace interactions and learning rate'''
""" create an AutoVW instance for tuning namespace interactions and learning rate"""
# set up the search space and init config
search_space_nilr = {'interactions': AutoVW.AUTOMATIC, 'learning_rate': loguniform(lower=2e-10, upper=1.0)}
init_config_nilr = {'interactions': set(), 'learning_rate': 0.5}
search_space_nilr = {
"interactions": AutoVW.AUTOMATIC,
"learning_rate": loguniform(lower=2e-10, upper=1.0),
}
init_config_nilr = {"interactions": set(), "learning_rate": 0.5}
# create an AutoVW instance
autovw = AutoVW(max_live_model_num=5, search_space=search_space_nilr, init_config=init_config_nilr)
autovw = AutoVW(
max_live_model_num=5, search_space=search_space_nilr, init_config=init_config_nilr
)
```
A user can use the resulting AutoVW instances `autovw` in a similar way to a vanilla Vowpal Wabbit instance, i.e., `pyvw.vw`, to perform online learning by iteratively calling its `predict(data_example)` and `learn(data_example)` functions at each data example.

View File

@@ -1,16 +1,17 @@
from typing import Optional, Union
import logging
from typing import Optional, Union
from flaml.onlineml import OnlineTrialRunner
from flaml.onlineml.trial import get_ns_feature_dim_from_vw_example
from flaml.tune import (
Trial,
Categorical,
Float,
PolynomialExpansionSet,
Trial,
polynomial_expansion_set,
)
from flaml.onlineml import OnlineTrialRunner
from flaml.tune.scheduler import ChaChaScheduler
from flaml.tune.searcher import ChampionFrontierSearcher
from flaml.onlineml.trial import get_ns_feature_dim_from_vw_example
logger = logging.getLogger(__name__)
@@ -140,7 +141,7 @@ class AutoVW:
max_live_model_num=self._max_live_model_num,
searcher=searcher,
scheduler=scheduler,
**self._automl_runner_args
**self._automl_runner_args,
)
def predict(self, data_sample):

View File

@@ -1,14 +1,16 @@
import numpy as np
import logging
import time
import math
import copy
import collections
import copy
import logging
import math
import time
from typing import Optional, Union
import numpy as np
from flaml.tune import Trial
try:
from sklearn.metrics import mean_squared_error, mean_absolute_error
from sklearn.metrics import mean_absolute_error, mean_squared_error
except ImportError:
pass

View File

@@ -1,10 +1,11 @@
import numpy as np
import logging
import math
import numpy as np
from flaml.tune import Trial
from flaml.tune.scheduler import TrialScheduler
import logging
logger = logging.getLogger(__name__)

View File

@@ -5,45 +5,47 @@ It can be used standalone, or together with ray tune or nni. Please find detaile
Below are some quick examples.
* Example for sequential tuning (recommended when compute resource is limited and each trial can consume all the resources):
- Example for sequential tuning (recommended when compute resource is limited and each trial can consume all the resources):
```python
# require: pip install flaml[blendsearch]
from flaml import tune
import time
def evaluate_config(config):
'''evaluate a hyperparameter configuration'''
"""evaluate a hyperparameter configuration"""
# we uss a toy example with 2 hyperparameters
metric = (round(config['x'])-85000)**2 - config['x']/config['y']
metric = (round(config["x"]) - 85000) ** 2 - config["x"] / config["y"]
# usually the evaluation takes an non-neglible cost
# and the cost could be related to certain hyperparameters
# in this example, we assume it's proportional to x
time.sleep(config['x']/100000)
time.sleep(config["x"] / 100000)
# use tune.report to report the metric to optimize
tune.report(metric=metric)
analysis = tune.run(
evaluate_config, # the function to evaluate a config
evaluate_config, # the function to evaluate a config
config={
'x': tune.lograndint(lower=1, upper=100000),
'y': tune.randint(lower=1, upper=100000)
}, # the search space
low_cost_partial_config={'x':1}, # a initial (partial) config with low cost
metric='metric', # the name of the metric used for optimization
mode='min', # the optimization mode, 'min' or 'max'
num_samples=-1, # the maximal number of configs to try, -1 means infinite
time_budget_s=60, # the time budget in seconds
local_dir='logs/', # the local directory to store logs
"x": tune.lograndint(lower=1, upper=100000),
"y": tune.randint(lower=1, upper=100000),
}, # the search space
low_cost_partial_config={"x": 1}, # a initial (partial) config with low cost
metric="metric", # the name of the metric used for optimization
mode="min", # the optimization mode, 'min' or 'max'
num_samples=-1, # the maximal number of configs to try, -1 means infinite
time_budget_s=60, # the time budget in seconds
local_dir="logs/", # the local directory to store logs
# verbose=0, # verbosity
# use_ray=True, # uncomment when performing parallel tuning using ray
)
)
print(analysis.best_trial.last_result) # the best trial's result
print(analysis.best_config) # the best config
print(analysis.best_config) # the best config
```
* Example for using ray tune's API:
- Example for using ray tune's API:
```python
# require: pip install flaml[blendsearch,ray]
@@ -51,36 +53,39 @@ from ray import tune as raytune
from flaml import CFO, BlendSearch
import time
def evaluate_config(config):
'''evaluate a hyperparameter configuration'''
"""evaluate a hyperparameter configuration"""
# we use a toy example with 2 hyperparameters
metric = (round(config['x'])-85000)**2 - config['x']/config['y']
metric = (round(config["x"]) - 85000) ** 2 - config["x"] / config["y"]
# usually the evaluation takes a non-neglible cost
# and the cost could be related to certain hyperparameters
# in this example, we assume it's proportional to x
time.sleep(config['x']/100000)
time.sleep(config["x"] / 100000)
# use tune.report to report the metric to optimize
tune.report(metric=metric)
# provide a time budget (in seconds) for the tuning process
time_budget_s = 60
# provide the search space
config_search_space = {
'x': tune.lograndint(lower=1, upper=100000),
'y': tune.randint(lower=1, upper=100000)
}
"x": tune.lograndint(lower=1, upper=100000),
"y": tune.randint(lower=1, upper=100000),
}
# provide the low cost partial config
low_cost_partial_config={'x':1}
low_cost_partial_config = {"x": 1}
# set up CFO
cfo = CFO(low_cost_partial_config=low_cost_partial_config)
# set up BlendSearch
blendsearch = BlendSearch(
metric="metric", mode="min",
metric="metric",
mode="min",
space=config_search_space,
low_cost_partial_config=low_cost_partial_config,
time_budget_s=time_budget_s
time_budget_s=time_budget_s,
)
# NOTE: when using BlendSearch as a search_alg in ray tune, you need to
# configure the 'time_budget_s' for BlendSearch accordingly such that
@@ -89,28 +94,28 @@ blendsearch = BlendSearch(
# automatically in flaml.
analysis = raytune.run(
evaluate_config, # the function to evaluate a config
evaluate_config, # the function to evaluate a config
config=config_search_space,
metric='metric', # the name of the metric used for optimization
mode='min', # the optimization mode, 'min' or 'max'
num_samples=-1, # the maximal number of configs to try, -1 means infinite
time_budget_s=time_budget_s, # the time budget in seconds
local_dir='logs/', # the local directory to store logs
search_alg=blendsearch # or cfo
metric="metric", # the name of the metric used for optimization
mode="min", # the optimization mode, 'min' or 'max'
num_samples=-1, # the maximal number of configs to try, -1 means infinite
time_budget_s=time_budget_s, # the time budget in seconds
local_dir="logs/", # the local directory to store logs
search_alg=blendsearch, # or cfo
)
print(analysis.best_trial.last_result) # the best trial's result
print(analysis.best_config) # the best config
```
* Example for using NNI: An example of using BlendSearch with NNI can be seen in [test](https://github.com/microsoft/FLAML/tree/main/test/nni). CFO can be used as well in a similar manner. To run the example, first make sure you have [NNI](https://nni.readthedocs.io/en/stable/) installed, then run:
- Example for using NNI: An example of using BlendSearch with NNI can be seen in [test](https://github.com/microsoft/FLAML/tree/main/test/nni). CFO can be used as well in a similar manner. To run the example, first make sure you have [NNI](https://nni.readthedocs.io/en/stable/) installed, then run:
```shell
$nnictl create --config ./config.yml
```
* For more examples, please check out
[notebooks](https://github.com/microsoft/FLAML/tree/main/notebook/).
- For more examples, please check out
[notebooks](https://github.com/microsoft/FLAML/tree/main/notebook/).
`flaml` offers two HPO methods: CFO and BlendSearch.
`flaml.tune` uses BlendSearch by default.
@@ -185,16 +190,16 @@ tune.run(...
)
```
* Recommended scenario: cost-related hyperparameters exist, a low-cost
initial point is known, and the search space is complex such that local search
is prone to be stuck at local optima.
- Recommended scenario: cost-related hyperparameters exist, a low-cost
initial point is known, and the search space is complex such that local search
is prone to be stuck at local optima.
* Suggestion about using larger search space in BlendSearch:
In hyperparameter optimization, a larger search space is desirable because it is more likely to include the optimal configuration (or one of the optimal configurations) in hindsight. However the performance (especially anytime performance) of most existing HPO methods is undesirable if the cost of the configurations in the search space has a large variation. Thus hand-crafted small search spaces (with relatively homogeneous cost) are often used in practice for these methods, which is subject to idiosyncrasy. BlendSearch combines the benefits of local search and global search, which enables a smart (economical) way of deciding where to explore in the search space even though it is larger than necessary. This allows users to specify a larger search space in BlendSearch, which is often easier and a better practice than narrowing down the search space by hand.
- Suggestion about using larger search space in BlendSearch:
In hyperparameter optimization, a larger search space is desirable because it is more likely to include the optimal configuration (or one of the optimal configurations) in hindsight. However the performance (especially anytime performance) of most existing HPO methods is undesirable if the cost of the configurations in the search space has a large variation. Thus hand-crafted small search spaces (with relatively homogeneous cost) are often used in practice for these methods, which is subject to idiosyncrasy. BlendSearch combines the benefits of local search and global search, which enables a smart (economical) way of deciding where to explore in the search space even though it is larger than necessary. This allows users to specify a larger search space in BlendSearch, which is often easier and a better practice than narrowing down the search space by hand.
For more technical details, please check our papers.
* [Frugal Optimization for Cost-related Hyperparameters](https://arxiv.org/abs/2005.01571). Qingyun Wu, Chi Wang, Silu Huang. AAAI 2021.
- [Frugal Optimization for Cost-related Hyperparameters](https://arxiv.org/abs/2005.01571). Qingyun Wu, Chi Wang, Silu Huang. AAAI 2021.
```bibtex
@inproceedings{wu2021cfo,
@@ -205,7 +210,7 @@ For more technical details, please check our papers.
}
```
* [Economical Hyperparameter Optimization With Blended Search Strategy](https://www.microsoft.com/en-us/research/publication/economical-hyperparameter-optimization-with-blended-search-strategy/). Chi Wang, Qingyun Wu, Silu Huang, Amin Saied. ICLR 2021.
- [Economical Hyperparameter Optimization With Blended Search Strategy](https://www.microsoft.com/en-us/research/publication/economical-hyperparameter-optimization-with-blended-search-strategy/). Chi Wang, Qingyun Wu, Silu Huang, Amin Saied. ICLR 2021.
```bibtex
@inproceedings{wang2021blendsearch,

View File

@@ -3,16 +3,16 @@ try:
assert ray_version >= "1.10.0"
from ray.tune import (
uniform,
lograndint,
loguniform,
qlograndint,
qloguniform,
qrandint,
qrandn,
quniform,
randint,
qrandint,
randn,
qrandn,
loguniform,
qloguniform,
lograndint,
qlograndint,
uniform,
)
if ray_version.startswith("1."):
@@ -20,21 +20,20 @@ try:
else:
from ray.tune.search import sample
except (ImportError, AssertionError):
from . import sample
from .sample import (
uniform,
lograndint,
loguniform,
qlograndint,
qloguniform,
qrandint,
qrandn,
quniform,
randint,
qrandint,
randn,
qrandn,
loguniform,
qloguniform,
lograndint,
qlograndint,
uniform,
)
from . import sample
from .tune import run, report, INCUMBENT_RESULT
from .sample import polynomial_expansion_set
from .sample import PolynomialExpansionSet, Categorical, Float
from .sample import Categorical, Float, PolynomialExpansionSet, polynomial_expansion_set
from .trial import Trial
from .tune import INCUMBENT_RESULT, report, run
from .utils import choice

View File

@@ -15,10 +15,12 @@
# This source file is adapted here because ray does not fully support Windows.
# Copyright (c) Microsoft Corporation.
from typing import Dict, Optional
import numpy as np
from .trial import Trial
import logging
from typing import Dict, Optional
import numpy as np
from .trial import Trial
logger = logging.getLogger(__name__)

37
flaml/tune/logger.py Normal file
View File

@@ -0,0 +1,37 @@
import logging
import os
class ColoredFormatter(logging.Formatter):
# ANSI escape codes for colors
COLORS = {
# logging.DEBUG: "\033[36m", # Cyan
# logging.INFO: "\033[32m", # Green
logging.WARNING: "\033[33m", # Yellow
logging.ERROR: "\033[31m", # Red
logging.CRITICAL: "\033[1;31m", # Bright Red
}
RESET = "\033[0m" # Reset to default
def __init__(self, fmt, datefmt, use_color=True):
super().__init__(fmt, datefmt)
self.use_color = use_color
def format(self, record):
formatted = super().format(record)
if self.use_color:
color = self.COLORS.get(record.levelno, "")
if color:
return f"{color}{formatted}{self.RESET}"
return formatted
logger = logging.getLogger(__name__)
use_color = True
if os.getenv("FLAML_LOG_NO_COLOR"):
use_color = False
logger_formatter = ColoredFormatter(
"[%(name)s: %(asctime)s] {%(lineno)d} %(levelname)s - %(message)s", "%m-%d %H:%M:%S", use_color
)
logger.propagate = False

View File

@@ -19,6 +19,7 @@ import logging
from copy import copy
from math import isclose
from typing import Any, Dict, List, Optional, Sequence, Union
import numpy as np
# Backwards compatibility

View File

@@ -1,6 +1,6 @@
from .trial_scheduler import TrialScheduler
from .online_scheduler import (
ChaChaScheduler,
OnlineScheduler,
OnlineSuccessiveDoublingScheduler,
ChaChaScheduler,
)
from .trial_scheduler import TrialScheduler

View File

@@ -1,9 +1,12 @@
import numpy as np
import logging
from typing import Dict
from flaml.tune.scheduler import TrialScheduler
import numpy as np
from flaml.tune import Trial
from .trial_scheduler import TrialScheduler
logger = logging.getLogger(__name__)

View File

@@ -2,10 +2,11 @@
# * Copyright (c) Microsoft Corporation. All rights reserved.
# * Licensed under the MIT License. See LICENSE file in the
# * project root for license information.
from typing import Dict, Optional, List, Tuple, Callable, Union
import numpy as np
import time
import pickle
import time
from typing import Callable, Dict, List, Optional, Tuple, Union
import numpy as np
try:
from ray import __version__ as ray_version
@@ -18,17 +19,17 @@ try:
from ray.tune.search import Searcher
from ray.tune.search.optuna import OptunaSearch as GlobalSearch
except (ImportError, AssertionError):
from .suggestion import Searcher
from .suggestion import OptunaSearch as GlobalSearch
from ..trial import unflatten_dict, flatten_dict
from .. import INCUMBENT_RESULT
from .search_thread import SearchThread
from .flow2 import FLOW2
from ..space import add_cost_to_space, indexof, normalize, define_by_run_func
from ..result import TIME_TOTAL_S
from .suggestion import Searcher
import logging
from .. import INCUMBENT_RESULT
from ..result import TIME_TOTAL_S
from ..space import add_cost_to_space, define_by_run_func, indexof, normalize
from ..trial import flatten_dict, unflatten_dict
from .flow2 import FLOW2
from .search_thread import SearchThread
SEARCH_THREAD_EPS = 1.0
PENALTY = 1e10 # penalty term for constraints
logger = logging.getLogger(__name__)
@@ -931,27 +932,27 @@ try:
assert ray_version >= "1.10.0"
from ray.tune import (
uniform,
quniform,
choice,
randint,
qrandint,
randn,
qrandn,
loguniform,
qloguniform,
qrandint,
qrandn,
quniform,
randint,
randn,
uniform,
)
except (ImportError, AssertionError):
from ..sample import (
uniform,
quniform,
choice,
randint,
qrandint,
randn,
qrandn,
loguniform,
qloguniform,
qrandint,
qrandn,
quniform,
randint,
randn,
uniform,
)
try:
@@ -978,7 +979,7 @@ class BlendSearchTuner(BlendSearch, NNITuner):
result = {
"config": parameters,
self._metric: extract_scalar_reward(value),
self.cost_attr: 1 if isinstance(value, float) else value.get(self.cost_attr, value.get("sequence", 1))
self.cost_attr: 1 if isinstance(value, float) else value.get(self.cost_attr, value.get("sequence", 1)),
# if nni does not report training cost,
# using sequence as an approximation.
# if no sequence, using a constant 1

View File

@@ -2,8 +2,8 @@
# * Copyright (c) Microsoft Corporation. All rights reserved.
# * Licensed under the MIT License. See LICENSE file in the
# * project root for license information.
from .flow2 import FLOW2
from .blendsearch import CFO
from .flow2 import FLOW2
class FLOW2Cat(FLOW2):

View File

@@ -2,31 +2,34 @@
# * Copyright (c) Microsoft Corporation. All rights reserved.
# * Licensed under the MIT License. See LICENSE file in the
# * project root for license information.
from typing import Dict, Optional, Tuple
import numpy as np
import logging
from collections import defaultdict
from typing import Dict, Optional, Tuple
import numpy as np
try:
from ray import __version__ as ray_version
assert ray_version >= "1.0.0"
if ray_version.startswith("1."):
from ray.tune.suggest import Searcher
from ray.tune import sample
from ray.tune.suggest import Searcher
else:
from ray.tune.search import Searcher, sample
from ray.tune.utils.util import flatten_dict, unflatten_dict
except (ImportError, AssertionError):
from .suggestion import Searcher
from flaml.tune import sample
from ..trial import flatten_dict, unflatten_dict
from .suggestion import Searcher
from flaml.config import SAMPLE_MULTIPLY_FACTOR
from ..space import (
complete_config,
denormalize,
normalize,
generate_variants_compatible,
normalize,
)
logger = logging.getLogger(__name__)
@@ -106,7 +109,7 @@ class FLOW2(Searcher):
else:
mode = "min"
super(FLOW2, self).__init__(metric=metric, mode=mode)
super().__init__(metric=metric, mode=mode)
# internally minimizes, so "max" => -1
if mode == "max":
self.metric_op = -1.0
@@ -135,7 +138,7 @@ class FLOW2(Searcher):
self.max_resource = max_resource
self._resource = None
self._f_best = None # only use for lexico_comapre. It represent the best value achieved by lexico_flow.
self._step_lb = np.Inf
self._step_lb = np.inf
self._histories = None # only use for lexico_comapre. It records the result of historical configurations.
if space is not None:
self._init_search()
@@ -347,7 +350,7 @@ class FLOW2(Searcher):
else:
assert (
self.lexico_objectives["tolerances"][k_metric][-1] == "%"
), "String tolerance of {} should use %% as the suffix".format(k_metric)
), f"String tolerance of {k_metric} should use %% as the suffix"
tolerance_bound = self._f_best[k_metric] * (
1 + 0.01 * float(self.lexico_objectives["tolerances"][k_metric].replace("%", ""))
)
@@ -382,7 +385,7 @@ class FLOW2(Searcher):
else:
assert (
self.lexico_objectives["tolerances"][k_metric][-1] == "%"
), "String tolerance of {} should use %% as the suffix".format(k_metric)
), f"String tolerance of {k_metric} should use %% as the suffix"
tolerance_bound = self._f_best[k_metric] * (
1 + 0.01 * float(self.lexico_objectives["tolerances"][k_metric].replace("%", ""))
)

View File

@@ -1,9 +1,11 @@
import numpy as np
import logging
import itertools
from typing import Dict, Optional, List
from flaml.tune import Categorical, Float, PolynomialExpansionSet, Trial
import logging
from typing import Dict, List, Optional
import numpy as np
from flaml.onlineml import VowpalWabbitTrial
from flaml.tune import Categorical, Float, PolynomialExpansionSet, Trial
from flaml.tune.searcher import CFO
logger = logging.getLogger(__name__)
@@ -64,7 +66,7 @@ class ChampionFrontierSearcher(BaseSearcher):
POLY_EXPANSION_ADDITION_NUM = 1
# the order of polynomial expansions to add based on the given seed interactions
EXPANSION_ORDER = 2
# the number of new challengers with new numerical hyperparamter configs
# the number of new challengers with new numerical hyperparameter configs
NUMERICAL_NUM = 2
# In order to use CFO, a loss name and loss values of configs are need
@@ -78,7 +80,7 @@ class ChampionFrontierSearcher(BaseSearcher):
CFO_SEARCHER_METRIC_NAME = "pseudo_loss"
CFO_SEARCHER_LARGE_LOSS = 1e6
# the random seed used in generating numerical hyperparamter configs (when CFO is not used)
# the random seed used in generating numerical hyperparameter configs (when CFO is not used)
NUM_RANDOM_SEED = 111
CHAMPION_TRIAL_NAME = "champion_trial"
@@ -317,7 +319,7 @@ class ChampionFrontierSearcher(BaseSearcher):
candidate_configs = [set(seed_interactions) | set(item) for item in space]
final_candidate_configs = []
for c in candidate_configs:
new_c = set([e for e in c if len(e) > 1])
new_c = {e for e in c if len(e) > 1}
final_candidate_configs.append(new_c)
return final_candidate_configs

View File

@@ -3,6 +3,7 @@
# * Licensed under the MIT License. See LICENSE file in the
# * project root for license information.
from typing import Dict, Optional
import numpy as np
try:
@@ -15,11 +16,12 @@ try:
from ray.tune.search import Searcher
except (ImportError, AssertionError):
from .suggestion import Searcher
from .flow2 import FLOW2
from ..space import add_cost_to_space, unflatten_hierarchical
from ..result import TIME_TOTAL_S
import logging
from ..result import TIME_TOTAL_S
from ..space import add_cost_to_space, unflatten_hierarchical
from .flow2 import FLOW2
logger = logging.getLogger(__name__)

View File

@@ -15,15 +15,17 @@
# This source file is adapted here because ray does not fully support Windows.
# Copyright (c) Microsoft Corporation.
import time
import functools
import warnings
import copy
import numpy as np
import functools
import logging
from typing import Any, Dict, Optional, Union, List, Tuple, Callable
import pickle
from .variant_generator import parse_spec_vars
import time
import warnings
from collections import defaultdict
from typing import Any, Callable, Dict, List, Optional, Tuple, Union
import numpy as np
from ..sample import (
Categorical,
Domain,
@@ -34,7 +36,7 @@ from ..sample import (
Uniform,
)
from ..trial import flatten_dict, unflatten_dict
from collections import defaultdict
from .variant_generator import parse_spec_vars
logger = logging.getLogger(__name__)
@@ -183,13 +185,13 @@ class ConcurrencyLimiter(Searcher):
"""
def __init__(self, searcher: Searcher, max_concurrent: int, batch: bool = False):
assert type(max_concurrent) is int and max_concurrent > 0
assert isinstance(max_concurrent, int) and max_concurrent > 0
self.searcher = searcher
self.max_concurrent = max_concurrent
self.batch = batch
self.live_trials = set()
self.cached_results = {}
super(ConcurrencyLimiter, self).__init__(metric=self.searcher.metric, mode=self.searcher.mode)
super().__init__(metric=self.searcher.metric, mode=self.searcher.mode)
def suggest(self, trial_id: str) -> Optional[Dict]:
assert trial_id not in self.live_trials, f"Trial ID {trial_id} must be unique: already found in set."
@@ -252,8 +254,8 @@ try:
import optuna as ot
from optuna.distributions import BaseDistribution as OptunaDistribution
from optuna.samplers import BaseSampler
from optuna.trial import TrialState as OptunaTrialState
from optuna.trial import Trial as OptunaTrial
from optuna.trial import TrialState as OptunaTrialState
except ImportError:
ot = None
OptunaDistribution = None
@@ -283,25 +285,21 @@ def validate_warmstart(
"""
if points_to_evaluate:
if not isinstance(points_to_evaluate, list):
raise TypeError("points_to_evaluate expected to be a list, got {}.".format(type(points_to_evaluate)))
raise TypeError(f"points_to_evaluate expected to be a list, got {type(points_to_evaluate)}.")
for point in points_to_evaluate:
if not isinstance(point, (dict, list)):
raise TypeError(f"points_to_evaluate expected to include list or dict, " f"got {point}.")
if validate_point_name_lengths and (not len(point) == len(parameter_names)):
raise ValueError(
"Dim of point {}".format(point)
+ " and parameter_names {}".format(parameter_names)
+ " do not match."
)
raise ValueError(f"Dim of point {point}" + f" and parameter_names {parameter_names}" + " do not match.")
if points_to_evaluate and evaluated_rewards:
if not isinstance(evaluated_rewards, list):
raise TypeError("evaluated_rewards expected to be a list, got {}.".format(type(evaluated_rewards)))
raise TypeError(f"evaluated_rewards expected to be a list, got {type(evaluated_rewards)}.")
if not len(evaluated_rewards) == len(points_to_evaluate):
raise ValueError(
"Dim of evaluated_rewards {}".format(evaluated_rewards)
+ " and points_to_evaluate {}".format(points_to_evaluate)
f"Dim of evaluated_rewards {evaluated_rewards}"
+ f" and points_to_evaluate {points_to_evaluate}"
+ " do not match."
)
@@ -545,7 +543,7 @@ class OptunaSearch(Searcher):
evaluated_rewards: Optional[List] = None,
):
assert ot is not None, "Optuna must be installed! Run `pip install optuna`."
super(OptunaSearch, self).__init__(metric=metric, mode=mode)
super().__init__(metric=metric, mode=mode)
if isinstance(space, dict) and space:
resolved_vars, domain_vars, grid_vars = parse_spec_vars(space)
@@ -559,7 +557,15 @@ class OptunaSearch(Searcher):
self._space = space
self._points_to_evaluate = points_to_evaluate or []
self._evaluated_rewards = evaluated_rewards
# rewards should be a list of floats, not a dict
# After Optuna > 3.5.0, there is a check for NaN in the list "any(math.isnan(x) for x in self._values)"
# which will raise an error when encountering a dict
if evaluated_rewards is not None:
self._evaluated_rewards = [
list(item.values())[0] if isinstance(item, dict) else item for item in evaluated_rewards
]
else:
self._evaluated_rewards = evaluated_rewards
self._study_name = "optuna" # Fixed study name for in-memory storage
@@ -871,9 +877,9 @@ class OptunaSearch(Searcher):
elif isinstance(domain, Integer):
if isinstance(sampler, LogUniform):
return ot.distributions.IntLogUniformDistribution(
domain.lower, domain.upper - 1, step=quantize or 1
)
# ``step`` argument Deprecated in v2.0.0. ``step`` argument should be 1 in Log Distribution
# The removal of this feature is currently scheduled for v4.0.0,
return ot.distributions.IntLogUniformDistribution(domain.lower, domain.upper - 1, step=1)
elif isinstance(sampler, Uniform):
# Upper bound should be inclusive for quantization and
# exclusive otherwise

View File

@@ -17,9 +17,11 @@
# Copyright (c) Microsoft Corporation.
import copy
import logging
from typing import Any, Dict, Generator, List, Tuple
import numpy
import random
from typing import Any, Dict, Generator, List, Tuple
import numpy
from ..sample import Categorical, Domain, RandomState
try:
@@ -250,7 +252,7 @@ def _try_resolve(v) -> Tuple[bool, Any]:
# Grid search values
grid_values = v["grid_search"]
if not isinstance(grid_values, list):
raise TuneError("Grid search expected list of values, got: {}".format(grid_values))
raise TuneError(f"Grid search expected list of values, got: {grid_values}")
return False, Categorical(grid_values).grid()
return True, v
@@ -300,13 +302,13 @@ def has_unresolved_values(spec: Dict) -> bool:
class _UnresolvedAccessGuard(dict):
def __init__(self, *args, **kwds):
super(_UnresolvedAccessGuard, self).__init__(*args, **kwds)
super().__init__(*args, **kwds)
self.__dict__ = self
def __getattribute__(self, item):
value = dict.__getattribute__(self, item)
if not _is_resolved(value):
raise RecursiveDependencyError("`{}` recursively depends on {}".format(item, value))
raise RecursiveDependencyError(f"`{item}` recursively depends on {value}")
elif isinstance(value, dict):
return _UnresolvedAccessGuard(value)
else:

View File

@@ -11,9 +11,10 @@ try:
except (ImportError, AssertionError):
from . import sample
from .searcher.variant_generator import generate_variants
from typing import Dict, Optional, Any, Tuple, Generator, List, Union
import numpy as np
import logging
from typing import Any, Dict, Generator, List, Optional, Tuple, Union
import numpy as np
logger = logging.getLogger(__name__)
@@ -489,7 +490,7 @@ def complete_config(
elif domain.bounded:
up, low, gauss_std = 1, 0, 1.0
else:
up, low, gauss_std = np.Inf, -np.Inf, 1.0
up, low, gauss_std = np.inf, -np.inf, 1.0
if domain.bounded:
if isinstance(up, list):
up[-1] = min(up[-1], 1)

View File

@@ -1,8 +1,8 @@
from flaml.tune.spark.utils import (
broadcast_code,
check_spark,
get_n_cpus,
with_parameters,
broadcast_code,
)
__all__ = ["check_spark", "get_n_cpus", "with_parameters", "broadcast_code"]

View File

@@ -5,7 +5,6 @@ import threading
import time
from functools import lru_cache, partial
logger = logging.getLogger(__name__)
logger_formatter = logging.Formatter(
"[%(name)s: %(asctime)s] {%(lineno)d} %(levelname)s - %(message)s", "%m-%d %H:%M:%S"
@@ -13,10 +12,10 @@ logger_formatter = logging.Formatter(
logger.propagate = False
os.environ["PYARROW_IGNORE_TIMEZONE"] = "1"
try:
import py4j
import pyspark
from pyspark.sql import SparkSession
from pyspark.util import VersionUtils
import py4j
except ImportError:
_have_spark = False
py4j = None
@@ -163,6 +162,10 @@ def broadcast_code(custom_code="", file_name="mylearner"):
assert isinstance(MyLargeLGBM(), LGBMEstimator)
```
"""
# Check if Spark is available
spark_available, _ = check_spark()
# Write to local driver file system
flaml_path = os.path.dirname(os.path.abspath(__file__))
custom_code = textwrap.dedent(custom_code)
custom_path = os.path.join(flaml_path, file_name + ".py")
@@ -170,6 +173,24 @@ def broadcast_code(custom_code="", file_name="mylearner"):
with open(custom_path, "w") as f:
f.write(custom_code)
# If using Spark, broadcast the code content to executors
if spark_available:
spark = SparkSession.builder.getOrCreate()
bc_code = spark.sparkContext.broadcast(custom_code)
# Execute a job to ensure the code is distributed to all executors
def _write_code(bc):
code = bc.value
import os
module_path = os.path.join(os.path.dirname(os.path.abspath(__file__)), file_name + ".py")
os.makedirs(os.path.dirname(module_path), exist_ok=True)
with open(module_path, "w") as f:
f.write(code)
return True
spark.sparkContext.parallelize(range(1)).map(lambda _: _write_code(bc_code)).collect()
return custom_path
@@ -286,6 +307,7 @@ class PySparkOvertimeMonitor:
def __exit__(self, exc_type, exc_value, exc_traceback):
"""Exit the context manager.
This will wait for the monitor thread to nicely exit."""
logger.debug(f"monitor exited: {exc_type}, {exc_value}, {exc_traceback}")
if self._force_cancel and _have_spark:
self._finished_flag = True
self._monitor_daemon.join()
@@ -296,6 +318,11 @@ class PySparkOvertimeMonitor:
if not exc_type:
return True
elif exc_type == py4j.protocol.Py4JJavaError:
logger.debug("Py4JJavaError Exception: %s", exc_value)
return True
elif exc_type == TypeError:
# When force cancel, joblib>1.2.0 will raise joblib.externals.loky.process_executor._ExceptionWithTraceback
logger.debug("TypeError Exception: %s", exc_value)
return True
else:
return False

View File

@@ -15,10 +15,10 @@
# This source file is adapted here because ray does not fully support Windows.
# Copyright (c) Microsoft Corporation.
import uuid
import time
from numbers import Number
import uuid
from collections import deque
from numbers import Number
def flatten_dict(dt, delimiter="/", prevent_delimiter=False):
@@ -110,7 +110,7 @@ class Trial:
}
self.metric_n_steps[metric] = {}
for n in self.n_steps:
key = "last-{:d}-avg".format(n)
key = f"last-{n:d}-avg"
self.metric_analysis[metric][key] = value
# Store n as string for correct restore.
self.metric_n_steps[metric][str(n)] = deque([value], maxlen=n)
@@ -124,7 +124,7 @@ class Trial:
self.metric_analysis[metric]["last"] = value
for n in self.n_steps:
key = "last-{:d}-avg".format(n)
key = f"last-{n:d}-avg"
self.metric_n_steps[metric][str(n)].append(value)
self.metric_analysis[metric][key] = sum(self.metric_n_steps[metric][str(n)]) / len(
self.metric_n_steps[metric][str(n)]

View File

@@ -2,6 +2,7 @@
# * Copyright (c) Microsoft Corporation. All rights reserved.
# * Licensed under the MIT License. See LICENSE file in the
# * project root for license information.
import logging
from typing import Optional
# try:
@@ -10,7 +11,6 @@ from typing import Optional
# from ray.tune.trial import Trial
# except (ImportError, AssertionError):
from .trial import Trial
import logging
logger = logging.getLogger(__name__)

View File

@@ -2,13 +2,14 @@
# * Copyright (c) FLAML authors. All rights reserved.
# * Licensed under the MIT License. See LICENSE file in the
# * project root for license information.
from typing import Optional, Union, List, Callable, Tuple, Dict
import numpy as np
import datetime
import time
import os
import sys
import time
from collections import defaultdict
from typing import Callable, Dict, List, Optional, Tuple, Union
import numpy as np
try:
from ray import __version__ as ray_version
@@ -20,14 +21,26 @@ except (ImportError, AssertionError):
from .analysis import ExperimentAnalysis as EA
else:
ray_available = True
from .trial import Trial
from .result import DEFAULT_METRIC
import logging
from flaml.tune.spark.utils import PySparkOvertimeMonitor, check_spark
logger = logging.getLogger(__name__)
logger.propagate = False
from .logger import logger, logger_formatter
from .result import DEFAULT_METRIC
from .trial import Trial
try:
import mlflow
except ImportError:
mlflow = None
try:
from flaml.fabric.mlflow import MLflowIntegration, is_autolog_enabled
internal_mlflow = True
except ImportError:
internal_mlflow = False
_use_ray = True
_runner = None
_verbose = 0
@@ -41,6 +54,7 @@ class ExperimentAnalysis(EA):
"""Class for storing the experiment results."""
def __init__(self, trials, metric, mode, lexico_objectives=None):
self.best_run_id = None
try:
super().__init__(self, None, trials, metric, mode)
self.lexico_objectives = lexico_objectives
@@ -92,10 +106,12 @@ class ExperimentAnalysis(EA):
feasible_index_filter = np.where(
feasible_value
<= max(
f_best[k_metric] + self.lexico_objectives["tolerances"][k_metric]
if not isinstance(self.lexico_objectives["tolerances"][k_metric], str)
else f_best[k_metric]
* (1 + 0.01 * float(self.lexico_objectives["tolerances"][k_metric].replace("%", ""))),
(
f_best[k_metric] + self.lexico_objectives["tolerances"][k_metric]
if not isinstance(self.lexico_objectives["tolerances"][k_metric], str)
else f_best[k_metric]
* (1 + 0.01 * float(self.lexico_objectives["tolerances"][k_metric].replace("%", "")))
),
k_target,
)
)[0]
@@ -123,6 +139,16 @@ class ExperimentAnalysis(EA):
else:
return self.best_trial.last_result
@property
def best_iteration(self) -> List[str]:
"""Help better navigate"""
best_trial = self.best_trial
best_trial_id = best_trial.trial_id
for i, trial in enumerate(self.trials):
if trial.trial_id == best_trial_id:
return i
return None
def report(_metric=None, **kwargs):
"""A function called by the HPO application to report final or intermediate
@@ -169,9 +195,16 @@ def report(_metric=None, **kwargs):
global _training_iteration
if _use_ray:
try:
from ray import tune
from ray import __version__ as ray_version
return tune.report(_metric, **kwargs)
if ray_version.startswith("1."):
from ray import tune
return tune.report(_metric, **kwargs)
else: # ray>=2
from ray.air import session
return session.report(metrics={"metric": _metric, **kwargs})
except ImportError:
# calling tune.report() outside tune.run()
return
@@ -229,6 +262,11 @@ def run(
lexico_objectives: Optional[dict] = None,
force_cancel: Optional[bool] = False,
n_concurrent_trials: Optional[int] = 0,
mlflow_exp_name: Optional[str] = None,
automl_info: Optional[Tuple[float]] = None,
extra_tag: Optional[dict] = None,
cost_attr: Optional[str] = "auto",
cost_budget: Optional[float] = None,
**ray_args,
):
"""The function-based way of performing HPO.
@@ -419,6 +457,10 @@ def run(
}
```
force_cancel: boolean, default=False | Whether to forcely cancel the PySpark job if overtime.
mlflow_exp_name: str, default=None | The name of the mlflow experiment. This should be specified if
enable mlflow autologging on Spark. Otherwise it will log all the results into the experiment of the
same name as the basename of main entry file.
automl_info: tuple, default=None | The information of the automl run. It should be a tuple of (mlflow_log_latency,).
n_concurrent_trials: int, default=0 | The number of concurrent trials when perform hyperparameter
tuning with Spark. Only valid when use_spark=True and spark is required:
`pip install flaml[spark]`. Please check
@@ -426,6 +468,13 @@ def run(
for more details about installing Spark. When tune.run() is called from AutoML, it will be
overwritten by the value of `n_concurrent_trials` in AutoML. When <= 0, the concurrent trials
will be set to the number of executors.
extra_tag: dict, default=None | Extra tags to be added to the mlflow runs created by autologging.
cost_attr: None or str to specify the attribute to evaluate the cost of different trials.
Default is "auto", which means that we will automatically choose the cost attribute to use (depending
on the nature of the resource budget). When cost_attr is set to None, cost differences between different trials will be omitted
in our search algorithm. When cost_attr is set to a str different from "auto" and "time_total_s",
this cost_attr must be available in the result dict of the trial.
cost_budget: A float of the cost budget. Only valid when cost_attr is a str different from "auto" and "time_total_s".
**ray_args: keyword arguments to pass to ray.tune.run().
Only valid when use_ray=True.
"""
@@ -433,10 +482,12 @@ def run(
global _verbose
global _running_trial
global _training_iteration
global internal_mlflow
old_use_ray = _use_ray
old_verbose = _verbose
old_running_trial = _running_trial
old_training_iteration = _training_iteration
if log_file_name:
dir_name = os.path.dirname(log_file_name)
if dir_name:
@@ -468,10 +519,6 @@ def run(
elif not logger.hasHandlers():
# Add the console handler.
_ch = logging.StreamHandler(stream=sys.stdout)
logger_formatter = logging.Formatter(
"[%(name)s: %(asctime)s] {%(lineno)d} %(levelname)s - %(message)s",
"%m-%d %H:%M:%S",
)
_ch.setFormatter(logger_formatter)
logger.addHandler(_ch)
if verbose <= 2:
@@ -481,7 +528,14 @@ def run(
else:
logger.setLevel(logging.CRITICAL)
from .searcher.blendsearch import BlendSearch, CFO, RandomSearch
if internal_mlflow and not automl_info and (mlflow.active_run() or is_autolog_enabled()):
mlflow_integration = MLflowIntegration("tune", mlflow_exp_name, extra_tag)
evaluation_function = mlflow_integration.wrap_evaluation_function(evaluation_function)
_internal_mlflow = not automl_info # True if mlflow_integration will be used for logging
else:
_internal_mlflow = False
from .searcher.blendsearch import CFO, BlendSearch, RandomSearch
if lexico_objectives is not None:
if "modes" not in lexico_objectives.keys():
@@ -526,7 +580,7 @@ def run(
import optuna as _
SearchAlgorithm = BlendSearch
logger.info("Using search algorithm {}.".format(SearchAlgorithm.__name__))
logger.info(f"Using search algorithm {SearchAlgorithm.__name__}.")
except ImportError:
if search_alg == "BlendSearch":
raise ValueError("To use BlendSearch, run: pip install flaml[blendsearch]")
@@ -535,7 +589,7 @@ def run(
logger.warning("Using CFO for search. To use BlendSearch, run: pip install flaml[blendsearch]")
else:
SearchAlgorithm = locals()[search_alg]
logger.info("Using search algorithm {}.".format(SearchAlgorithm.__name__))
logger.info(f"Using search algorithm {SearchAlgorithm.__name__}.")
metric = metric or DEFAULT_METRIC
search_alg = SearchAlgorithm(
metric=metric,
@@ -555,6 +609,8 @@ def run(
metric_constraints=metric_constraints,
use_incumbent_result_in_evaluation=use_incumbent_result_in_evaluation,
lexico_objectives=lexico_objectives,
cost_attr=cost_attr,
cost_budget=cost_budget,
)
else:
if metric is None or mode is None:
@@ -650,12 +706,13 @@ def run(
if not spark_available:
raise spark_error_msg
try:
from pyspark.sql import SparkSession
from joblib import Parallel, delayed, parallel_backend
from joblibspark import register_spark
from pyspark.sql import SparkSession
except ImportError as e:
raise ImportError(f"{e}. Try pip install flaml[spark] or set use_spark=False.")
from flaml.tune.searcher.suggestion import ConcurrencyLimiter
from .trial_runner import SparkTrialRunner
register_spark()
@@ -689,10 +746,16 @@ def run(
max_concurrent = max(1, search_alg.max_concurrent)
else:
max_concurrent = max(1, max_spark_parallelism)
passed_in_n_concurrent_trials = max(n_concurrent_trials, max_concurrent)
n_concurrent_trials = min(
n_concurrent_trials if n_concurrent_trials > 0 else num_executors,
max_concurrent,
)
if n_concurrent_trials < passed_in_n_concurrent_trials:
logger.warning(
f"The actual concurrent trials is {n_concurrent_trials}. You can set the environment "
f"variable `FLAML_MAX_CONCURRENT` to '{passed_in_n_concurrent_trials}' to override the detected num of executors."
)
with parallel_backend("spark"):
with Parallel(n_jobs=n_concurrent_trials, verbose=max(0, (verbose - 1) * 50)) as parallel:
try:
@@ -707,11 +770,15 @@ def run(
time_budget_s = np.inf
num_failures = 0
upperbound_num_failures = (len(evaluated_rewards) if evaluated_rewards else 0) + max_failure
logger.debug(f"automl_info: {automl_info}")
while (
time.time() - time_start < time_budget_s
and (num_samples < 0 or num_trials < num_samples)
and num_failures < upperbound_num_failures
):
if automl_info and automl_info[0] > 0 and time_budget_s < np.inf:
time_budget_s -= automl_info[0] * n_concurrent_trials
logger.debug(f"Remaining time budget with mlflow log latency: {time_budget_s} seconds.")
while len(_runner.running_trials) < n_concurrent_trials:
# suggest trials for spark
trial_next = _runner.step()
@@ -744,6 +811,9 @@ def run(
trial_to_run = trials_to_run[0]
_runner.running_trial = trial_to_run
if result is not None:
if _internal_mlflow:
mlflow_integration.record_trial(result, trial_to_run, metric)
if isinstance(result, dict):
if result:
logger.info(f"Brief result: {result}")
@@ -752,7 +822,7 @@ def run(
# When the result returned is an empty dict, set the trial status to error
trial_to_run.set_status(Trial.ERROR)
else:
logger.info("Brief result: {}".format({metric: result}))
logger.info("Brief result: {metric: result}")
report(_metric=result)
_runner.stop_trial(trial_to_run)
num_failures = 0
@@ -762,6 +832,20 @@ def run(
mode=mode,
lexico_objectives=lexico_objectives,
)
analysis.search_space = config
if _internal_mlflow:
mlflow_integration.log_tune(analysis, metric)
# try:
# _best_config = analysis.best_config
# except Exception:
# _best_config = None
# if _best_config:
# parallel(
# delayed(mlflow_integration.retrain)(evaluation_function, analysis.best_config)
# for dummy in [0]
# )
return analysis
finally:
# recover the global variables in case of nested run
@@ -773,6 +857,8 @@ def run(
_runner = old_runner
logger.handlers = old_handlers
logger.setLevel(old_level)
if _internal_mlflow:
mlflow_integration.adopt_children()
# simple sequential run without using tune.run() from ray
time_start = time.time()
@@ -806,7 +892,11 @@ def run(
result = None
with PySparkOvertimeMonitor(time_start, time_budget_s, force_cancel):
result = evaluation_function(trial_to_run.config)
logger.debug(f"result in tune: {trial_to_run}, {result}")
if result is not None:
if _internal_mlflow:
mlflow_integration.record_trial(result, trial_to_run, metric)
if isinstance(result, dict):
if result:
report(**result)
@@ -832,6 +922,19 @@ def run(
mode=mode,
lexico_objectives=lexico_objectives,
)
analysis.search_space = config
if _internal_mlflow:
mlflow_integration.log_tune(analysis, metric)
if analysis.best_run_id is not None:
logger.info(f"Best MLflow run name: {analysis.best_run_name}")
logger.info(f"Best MLflow run id: {analysis.best_run_id}")
# try:
# _best_config = analysis.best_config
# except Exception:
# _best_config = None
# if _best_config:
# mlflow_integration.retrain(evaluation_function, analysis.best_config)
return analysis
finally:
# recover the global variables in case of nested run
@@ -843,6 +946,8 @@ def run(
_runner = old_runner
logger.handlers = old_handlers
logger.setLevel(old_level)
if _internal_mlflow:
mlflow_integration.adopt_children()
class Tuner:

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